Showing :grangeslist•reset
4
Votes
9
Replies
232
Views
Using genomic ranges to get counts of non-overlapping (non-redundant) regions
genomicrangesgrangesgrangeslistR
16 months agonew_user6• 0• updated 16 months agoJames W. MacDonald 56k
7
Votes
8
Replies
4.6k
Views
How to remove out of bound rows from granges
Grangesgrangeslist
5.3 years agovinod.acear• 50• updated 18 months agobalwierz• 40
1
Vote
1
回复
260
Views
How to make combined annotation of 5'UTRs and CDS's?
annotationconcatenationGRangesListGenomicRanges
22 months agoanmej• 0
3
Votes
12
Replies
399
Views
mclapply to loop over a GRangesList object
GenomicRangesGRangesGRangesListparallelmclapply
24 months agofoehn• 60
4
Votes
5
Replies
1.7k
Views
summarize scores of GRanges into bins
genomicrangesgrangeslistbinfindoverlaps
3.4 years ago一个ssa Yeroslaviz♦ 1.5k• updated 2.3 years agoJenny HT Lee• 0
3
Votes
6
Replies
1.1k
Views
New Version of R cannot coerce "GRanges" to "RangesList"
grangeslistirangeslist
2.7 years agohicklingmeb• 10• updated 2.6 years agoHerve页面 14k
0
Votes
1
回复
297
Views
pintersect using GRangeslist
grangeslist
2.6 years agormortenson7• 0
1
Vote
6
Replies
482
Views
deconvole counts per feature from summerizedOverlaps with GRangesLists
summarizeoverlapsrangedsummarizedexperimentgrangeslistsummarizedexperiment
2.9 years agocosmin• 0
2
Votes
7
Replies
541
Views
Splitting lines of a GRanges object based on character list
grangesgrangeslist
2.9 years agostephen.williams• 10• updated 2.9 years ago迈克尔•劳伦斯 11k
0
Votes
2
Replies
347
Views
issue retrieving metadata after psetdiff function
grangeslistgranges
3.0 years agoandreag1987• 0
6
Votes
4
Replies
821
Views
unlist a exons GRangeslist object and add a gene name column
grangesgrangeslisttxdb.hsapiens.ucsc.hg19.knowngene
3.2 years agotangming2005• 160• updated 3.2 years agoHerve页面 14k
3
Votes
6
Replies
611
Views
一个ccessing GRangesList rows in Rcpp
RcppGRangesList
3.3 years agohauken_heyken• 70• updated 3.2 years agoMartin Morgan 25k
2
Votes
5
Replies
456
Views
Weaknesses with GRanges data type, or just me ?
GRangeslistGRangesmakeGrangesFromDataFrame
3.3 years agohauken_heyken• 70• updated 3.3 years ago迈克尔•劳伦斯 11k
6
Votes
6
Replies
3.5k
Views
converting a GRangesList object with different lengths into a data frame
genomicrangesgrangeslistdataframeirangeslistlists
3.4 years ago一个ssa Yeroslaviz♦ 1.5k• updated 3.4 years ago迈克尔•劳伦斯 11k
3
Votes
15
Replies
1.1k
Views
(Big)wig file of complete chromosome
bigwigrtracklayerimportgrangesgrangeslist
3.5 years ago一个ssa Yeroslaviz♦ 1.5k• updated 3.5 years ago迈克尔•劳伦斯 11k
1
Vote
1
回复
424
Views
Width in IRanges objects on "+" and "-" strand
irangesgrangesgrangeslist
3.5 years agoWalter F. Baumann• 10• updated 3.5 years ago迈克尔•劳伦斯 11k
0
Votes
1
回复
380
Views
qCount with a GRangesList is very slow
QuasRqCountGRangesList
3.6 years agovakul.mohanty• 10
0
Votes
10
Replies
922
Views
behaviour of findOverlaps on GRangesList object
findOverlapsgrangeslistGenomicRanges
3.6 years agolovro0• 10
3
Votes
1
回复
795
Views
Extracting Coordinates of startcodon from Grangeslist
biomartbioconductorgrangeslistcdsribosome profiling
3.7 years agoWalter F. Baumann• 10• updated 3.7 years agoHerve页面 14k
0
Votes
1
回复
406
Views
intersect ranges from a GAlignment object with a GRangesList
intersectgrangeslistgalignment
3.7 years agoccanchaya• 0• updated 3.7 years agoHerve页面 14k
0
Votes
4
Replies
467
Views
Data structure for my dataset
metadatagrangeslistgrangessample
3.7 years agoSim1pall8a• 0• updated 3.7 years ago迈克尔•劳伦斯 11k
0
Votes
3
Replies
873
Views
genes symbol in RangedSummarizedExperiment object and add GRangesList to DESeqDataSet object in DESeq2
deseq2rangedsummarizedexperimentgrangeslist
3.9 years ago • updated 3.8 years agolayal8785• 0
2
Votes
4
Replies
778
Views
How to render summary list for `GRangesList` by using `SummarizedExperiment` package?
rsummarizedexperimentgrangeslist
3.9 years agoJurat Shahidin• 70
2
Votes
3
Replies
2.5k
Views
Splitting a GRanges object into List of GRange objects by position.
Rgrangessubsettgrangeslistgroup
4.0 years agoRichardJActon• 30• updated 4.0 years agoMike Smith♦ 4.8k
0
Votes
2
Replies
530
Views
Why does a `first_time` object appear when showing GRangesList object?
genomicrangesgrangeslist
4.1年前ericedwardbryant• 0•更新4.1年前James W. MacDonald 56k
3
Votes
16
Replies
1.5k
Views
一个ny way to proceed duplicate removal for list of GRanges object ?
rgrangeslistduplicate
4.1年前Jurat Shahidin• 70•更新4.1年前Martin Morgan 25k
0
Votes
2
Replies
622
Views
problem with makeGRangesListFromFeatureFragments
genomicrangesirangesirangeslistgrangeslist
4.1年前mariamari693693• 0•更新4.1年前shepherl 2.5k
8
Votes
7
Replies
3.5k
Views
Combining two GRangesLists
GRangesgrangeslist
4.2 years agollevar• 20• updated 4.2 years agoMartin Morgan 25k
5
Votes
2
Replies
709
Views
seeking idea for proper output representation for multiple GRanges overlapping
rgrangeslistbiocparallelfindoverlaps
4.5 years ago • updated 4.2 years agoJurat Shahidin• 70
2
Votes
4
Replies
752
Views
一个ny way to combine two GRangesList easily ?
genomicrangesgrangeslistr
4.3 years agoJurat Shahidin• 70• updated 4.3 years ago迈克尔•劳伦斯 11k
3
Votes
4
Replies
550
Views
一个ny way to detach or simplify nested GRangesList ?
grangeslistfilteringr
4.4 years ago • updated 4.3 years agoJurat Shahidin• 70
3
Votes
5
Replies
576
Views
How to sort set of GRanges object in the list by increasing order?
grangesgrangeslistgenomicranges
4.5 years agoJurat Shahidin• 70
14
Votes
2
Replies
5.5k
Views
How to convert a GRangesList object into a GRanges object?
genomicrangesgrangeslistgrangess4
4.6 years agorichierocks• 40
6
Votes
9
Replies
985
Views
overlapsAny for elements in GRangesList
grangesgrangeslistoverlapsAny
4.7 years agomaltethodberg• 140• updated 4.7 years ago迈克尔•劳伦斯 11k
0
Votes
3
Replies
516
Views
replace, merge and delete entries in GRangeList
grangeslist
4.8 years agoshanrong.zhao• 0• updated 4.8 years ago迈克尔•劳伦斯 11k
0
Votes
5
Replies
794
Views
how to annotate GenomicRanges objects with genome build
grangeslistrangedsummarizedexperimentparathyroidSEgenomicrangesgranges
4.9 years agoLevi Waldron1.1k
2
Votes
2
Replies
697
Views
How to rename seqlevels style (I, II, III, ...,XVI, Mito to 1,2,3,...16, 17.) in txdb granges?
renameSeqlevelsmapSeqlevelsgrangeslistgrangestxdb
4.9 years agovinod.acear• 50
0
Votes
7
Replies
810
Views
GRangesList and nearest neighbour search (name-specific)
grangeslist
5.2 years ago • updated 4.9 years agoMaurits• 0
4
Votes
5
Replies
980
Views
GRangesList and `seqlevels<-` with force=TRUE
GRangesListGenomicRanges
5.0 years agoSimon Anders♦ 3.6k• updated 5.0 years agoHerve页面 14k
9
Votes
11
Replies
2.5k
Views
looping through a GRangesList object
GenomicRangesGRangesList
5.0 years agoSimon Anders♦ 3.6k• updated 5.0 years agoJulian Gehring♦ 1.3k
4
Votes
6
Replies
874
Views
GenomicRanges mapply to all combinations of GRangesList objects
genomicrangesmapplygrangeslist
5.3 years agofrancesca casalino• 50
0
Votes
3
Replies
582
Views
View of subsequences corresponding granges on +ve strand and rev. complementary of seq on -ve strand.
Viewsgrangesgrangeslistiranges
5.3 years agovinod.acear• 50• updated 5.3 years agoHerve页面 14k
2
Votes
5
Replies
1.0k
Views
Intersecting a Granges and a GRangesList using within
grangesgrangeslistfindoverlaps
5.4 years agod r• 150• updated 5.4 years agoHerve页面 14k
2
Votes
3
Replies
2.8k
Views
rtracklayer export GRangesList as gtf and change attributes
grangeslistrtracklayer
5.5 years agoJake• 70• updated 5.5 years ago迈克尔•劳伦斯 11k
2
Votes
5
Replies
1.3k
Views
From a GRanges object to a GRangeList
grangesgrangeslist
5.7 years agoPatrick Schorderet• 20• updated 5.7 years agoJames W. MacDonald 56k
1
Vote
4
Replies
861
Views
summing integer RLE
rlelistirangegrangeslist
5.8 years agogen• 30• updated 5.8 years agoChris Seidel• 50
0
Votes
1
回复
642
Views
Mean Coverage version of stat_coverage and coverage?
grangeslistgrangesGenomicfeaturesbam
5.9 years agogen• 30
4
Votes
2
Replies
1.6k
Views
Easy way to sort GRangesList by seqname/start position?
grangeslistsort
6.0 years agoJohannes Rainer♦ 1.8k• updated 6.0 years agoHerve页面 14k
4
Votes
2
Replies
1.3k
Views
Combine two GRanges to a single GRangesList
grangesgrangeslistGenomicRanges
6.1年前Sean Davis21k• updated 6.1 years agoMartin Morgan 25k
1
Vote
3
Replies
1.1k
Views
Fast way to access metadata for GRangesList?
grangeslistmetadata
6.2 years agoRobert K. Bradley• 40
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一个nswer: Independent filtering of NGS databyWolfgang Huber 13k
The fact that you are "*facing .... a very strong dispersion between the biological replicates of the treated samples*" suggests that the D…
一个nswer: Error log when I use biomaRt getBMbyWolfgang Huber 13k
Try the [installation instructions][1], in particular, run if(!requireNamespace("BiocManager", quietly = TRUE)) install.pa…
Comment: DiffBind installation fails: Error: package ‘BiocGenerics’ 0.34.0 is loaded, butbyMartin Morgan 25k
Update your Bioconductor version `BiocManager::install(version = "3.12")`. Make sure that the update succeeds `BiocManager::valid()`. It lo…
Comment: DiffBind installation fails: Error: package ‘BiocGenerics’ 0.34.0 is loaded, butby一个Tpoint • 390
Current Bioc is 3.12, not 3.11, see //www.anjoumacpherson.com/install/
Comment: DEseq2 comparison orderbyKevin Blighe 2.4k
Hi, I think that you need to change this line: sampleTable$condition <- factor(sampleTable$condition) ...to: sampleTable$conditi…
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Comment: Error while Installing BSgenome.Hsapiens.UCSC.hg38
DESeq2 design model that considers 3 factors
Comment: DESeq2 for time-course with nested individuals
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一个nswer: dba.count() of DiffBind 3.0 does not have bSubControl parameter
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