# #——global_options,包括= FALSE -------------------------------------------- 美元knitr: opts_chunk设置(图。Pos = 'h') doc_dir <- getwd() ##运行临时目录下的所有代码knitr::opts_knit$set(根。dir = tempdir ()) ## ---- packageInstallation eval = FALSE ---------------------------------------- # 如果(!"BiocManager" %in% rownames(installed.packages())) # install.packages("BiocManager") # BiocManager::install("BiocWorkflowTools") ## ----createBiocWorkflow, message=FALSE---------------------------------------- workflow_location <- file.path(tempdir()， "MyWorkflow") BiocWorkflowTools::createBiocWorkflow(path = workflow_location, open =FALSE) ## ----RStudioNew, echo =FALSE, out。width='50%'， fig.align='center'， fig.cap="新文章的创建集成到RStudio中。F1000Research模板可以通过访问新的R减价文件菜单对话框”——knitr: include_graphics(“数据/ Rstudio_newdoc.png”、错误= FALSE) # #——createDraft -------------------------------------------------------------- rmd_file < - rmarkdown::(“MyArticle草案。限制型心肌病”,模板= " f1000_article”,包= " BiocWorkflowTools”,编辑= FALSE) # #——呈现,eval = FALSE ----------------------------------------------------- # rmarkdown:渲染(rmd_file) # #——renderquiet,包括= FALSE --------------------------------------------- rmarkdown::渲染(rmd_file安静= TRUE) # #——uploadToOverleaf eval = FALSE --------------------------------------------- # BiocWorkflowTools:: uploadToOverleaf(“MyArticle”)