新特性- version参数现在允许用户选择1.1.38或2.0.1。-版本2.0.1包含RNASeq2Gene数据作为RSEM TPM基因表达值(#38,@mherberg)。- raggeexperiment类型数据对象的基因组信息更新,其中“37”现在是“GRCh37”(#40,@vjcitn)。-包含多个可以合并的分析的数据集(例如,OV, GBM)现在作为合并分析提供(#27,@lwaldron)。-小插图现在包括如何使用TCGAprimaryTumors和getWithColData函数的部分。错误修复和小的改进- mRNAArray分析现在返回矩阵类型的数据,而不是DataFrame (#31, @lgeistlinger, @vjcitn)。-删除了GISTIC资源的强制下载-已发布的文章现在可以引用("curatedTCGAData")版本1.12.0的变化Bug修复和微小的改进-在main函数中启用dry.run时输出数据集选项为表。-在加载数据时检查ragge实验的依赖关系,使用数据表示(@vjcitn, #39)版本1.10.0的更改新功能-控制curatedTCGAData函数的verbose参数(@lgeistlinger, #35) -当ExperimentHub服务离线时增加回退(@vjcitn, #39)#36) -由于MultiAssayExperiment版本1.8.0的变化中的新功能,数据导出部分添加到主插图中,错误修复和一些小改进-添加了在插图中使用TCGA数据的警告部分(@vjcitn建议)-在插图中为TCGAutils::TCGAsampleSelect提供示例,版本1.6.0的变化新功能-甲基化数据表示为一个DelayedMatrix,在summarizeexperiment对象中与HDF5文件相关。它们可以使用methyl* assay关键字下载。 - Big changes to documentation with table added for detailing ExperimentList data types (thanks to @lgeistlinger) - Vignette now includes some helper functions provided by TCGAutils Bug fixes and minor improvements - TCGAutils is available for use with curatedTCGAData - 'GISTIC_Peak' datasets are force downloaded due to caching mechanism issues - Issue of missing 'GISTIC' data for LAML and SKCM due to incorrect file links has been resolved (#29 @pcheng84) - Updated data documentation Changes in version 1.4.0 New features - dry.run argument in curatedTCGAData returns a list of metadata file matches Bug fixes and minor improvements - Main function now uses the MultiAssayExperiment constructor function Changes in version 1.2.0 New features - Released to Bioconductor - Supports multiple cancers with auto-merge of colData - Added full list of data types Bug fixes and minor improvements - Code clean up (helper functions) - Use metadata in main function to return list of datasets Changes in version 0.99.38 New features - Updated curatedTCGAData function - Supports multiple cancers - Includes curated colData datasets - Updated vignette, documentation from new builds - Updated metadata from pipeline Bug fixes and minor improvements - Updated NAMESPACE and DESCRIPTION - Included test for number of resources in EH and in metadata - Improved input handling of main function Changes in version 0.2.0 Bug fixes and minor improvements - Updated DESCRIPTION file to reflect authorship. - Progress towards submission to ExperimentHub Changes in version 0.1.0 - Added a NEWS file to track changes to the package.