版本1.6.0的更改新功能 - SCMultiome版本1.0.1提供了RNASEQ数据的10X格式。错误修复和较小的改进 - 更新Seqfish Vignette和文档。- 更新了检查AssayDimnames的总结性更改。-SCNMT默认为版本“ 1.0.0的QC过滤单元格”。对于未经过滤的单元,请参见“ SCNMT”中的版本部分。版本1.4.0的更改新功能 - SingleCellMultimodal功能允许多种多模式技术的组合。- Macaulay等人的GTSEQ数据。(2015)现在可用(@lgeistlinger) - Specht等人的Scope2数据。现在可获得@cvanderaa(#26) - Scmultiome提供10倍基因组学的PBMC,这要源于@rargelaguet错误修复和较小的改进 - 元数据信息(函数呼叫和呼叫技术映射)包括SingleCellemultimodal -scnmt中的scnmt中包括Multiassayexayexayexayexayexyexeexeexeexeexeexeexeexeexeexeexeexeexeexeexeexeexeexeexeexeexeepperseriment-元数据 - 改进和编辑了清晰度的贡献指南 - seqfish使用SpatialData参数与基于Spatialexperiment(@drighelli)更改(@drighelli)的更改的数据框输入 - 删除了Citeseq(@drighelli)在SampleMap中的额外列(@drighelli)中的更改。版本1.2.0新功能 - 新功能 - 新功能 - CITEseq function, vignette, and 'cord_blood' data available (@drighelli, #18) - Include seqFISH function, vignette, and 'mouse_visual_cortex' data (v1 and v2 from @drighelli, #14) - New 'mouse_gastrulation' dataset released (version "2.0.0"). - Use version argument to indicate the mouse_gastrulation data version - The data includes all cells not only the ones that passed the QC of all three 'omics (thanks @rargelaguet, @ajabadi). Bug fixes and minor improvements - Caching mechanism uses tools::R_user_dir and not rappdirs. - Improved display of available data using ExperimentHub metadata. - Improved documentation explaining versioning differences. - Contribution guidelines available at https://github.com/waldronlab/SingleCellMultiModal/wiki/Contributing-Guidelines - Default version argument in scNMT function now set to "2.0.0" (version "1.0.0" still available) Changes in version 1.0.0 New features - scNMT serves the mouse gastrulation dataset from Argelaguet et al. 2019 - Data set is provided by Argelaguet and colleagues via CloudStor link: https://cloudstor.aarnet.edu.au/plus/s/Xzf5vCgAEUVgbfQ - GitHub repository for the dataset by the authors available at: https://github.com/rargelaguet/scnmt_gastrulation Bug fixes and minor improvements - Row names in the scNMT dataset properly show mouse ENSEMBL identifiers