RTCGA.mutations

DOI:10.18129/B9.bioc.RTCGA.mutations

Mutations datasets from The Cancer Genome Atlas Project

Bioconductor version: Release (3.16)

Package provides mutations datasets from The Cancer Genome Atlas Project for all cohorts types from http://gdac.broadinstitute.org/. Mutations data format is explained here https://wiki.nci.nih.gov/display/TCGA/Mutation+Annotation+Format+(MAF)+Specification. There is extra one column with patients' barcodes. Data from 2015-11-01 snapshot.

Author: Marcin Kosinski

Maintainer: Marcin Kosinski

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("RTCGA.mutations")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation

查看文档的版本包age installed in your system, start R and enter:

browseVignettes("RTCGA.mutations")

HTML	R Script	Using RTCGA to download mutations data as included in RTCGA.mutations
PDF		Reference Manual
Text		NEWS

Details

biocViews	bob 体育平台下载 ,bob 体育平台下载
Version	20151101.28.0
License	GPL-2
Depends	R (>= 3.2.0),RTCGA
Imports
LinkingTo
Suggests	knitr,rmarkdown
SystemRequirements
Enhances
URL
BugReports	https://github.com/RTCGA/RTCGA/issues
Depends On Me
Imports Me
Suggests Me	RTCGA
Links To Me
Build Report

Package Archives

Followbob 体育网址 instructions to use this package in your R session.

Source Package	RTCGA.mutations_20151101.28.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/RTCGA.mutations
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/RTCGA.mutations
Package Short Url	//www.anjoumacpherson.com/packages/RTCGA.mutations/
Package Downloads Report	Download Stats