# #——引用,eval = FALSE ------------------------------------------------------ # minfi toBibtex(引用” ")) ## ---- 依赖,警告= FALSE,消息= FALSE ------------------------------- 库(minfi)库(minfiData) # #——RGsetEx ------------------------------------------------------------------ RGsetEx # # RGsetEx: RGChannelSet 622399特性MsetEx <——preprocessRaw (RGsetEx) # # MsetEx: MethylSet, 485512特性GMsetEx <——mapToGenome (MsetEx) # # GMsetEx:# #——baseDir GenomicMethylSet 485512特性 ------------------------------------------------------------------ baseDir < -系统。文件(“extdata”,包=“minfiData”)list.files (baseDir) # #——baseDir2 ----------------------------------------------------------------- list.files(文件。路径(baseDir”,5723646052 ")) ## ---- 表 -------------------------------------------------------------------- 目标< - read.metharray.sheet # #——BasenameColumn (baseDir)目标 >---------------------------------------------------------- 子(baseDir、”“目标:美元)# #——readingTargets ----------------------------------------------------------- RGset < - read.metharray。exp(目标=目标)# #——pData -------------------------------------------------------------------- RGset pd < - pData (RGset) pd[1:4] # #——read2 -------------------------------------------------------------------- RGset2 < read.metharray.exp(文件。RGset3 <- read.metharray. path(baseDir， "5723646052"))exp (baseDir,递归= TRUE) # #——sampleSheet2 ------------------------------------------------------------- targets2 < read.csv(文件。路径(baseDir SampleSheet.csv), stringsAsFactors = FALSE,跳过= 7)targets2 # #——Basename ----------------------------------------------------------------- targets2 Basename < -文件。路径(baseDir, targets2 Sentrix_ID paste0 (targets2 Sentrix_ID美元,targets2 Sentrix_Position美元 )) ## ---- 注释 --------------------------------------------------------------- 注释(RGsetEx) # #——sessionInfo,结果=“黑名单”,回声= FALSE ---------------------------------- toLatex (sessionInfo ())