# # # R代码从装饰图案来源的迭代器。Rnw“# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块1号:style-Sweave # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # BiocStyle::乳胶()# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块2:迭代器。Rnw: 30-42 # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #库(SeqVarTools) gds < - seqOpen (seqExampleFileName (gds)) seqData < - SeqVarData (gds)迭代器< - SeqVarBlockIterator (seqData variantBlock = 500) var.info < -列表(variantInfo (iterator))我< - 2 (iterateFilter (iterator)) {var.info[[我]]< - variantInfo (iterator)我< - i + 1}拉普兰人(负责人var.info) seqResetFilter (seqData) # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块3号:迭代器。Rnw: 48-54 # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # seqSetFilter (seqData, variant.sel = 1:10 0)迭代器< - SeqVarBlockIterator (seqData variantBlock = 500) var.info <——variantInfo (iterator) nrow (var.info) iterateFilter (iterator) seqResetFilter (seqData) # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块数量4:迭代器。Rnw: 64 - 76 # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #库(GenomicRanges) gr < -农庄(seqnames =代表(1,3),范围= IRanges(开始= c (1) e6, 2 e6, 3 e6),宽度= 1 e6))迭代器< - SeqVarRangeIterator (seqData variantRanges = gr) var.info < -列表(variantInfo (iterator))我< - 2 (iterateFilter (iterator)) {var.info[[我]]< - variantInfo (iterator)我< - i + 1}拉普兰人(负责人var.info) seqResetFilter (seqData) # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块5号:迭代器。Rnw: 86 - 97 # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # seqSetFilterChrom (seqData,包括=“22”)迭代器< - SeqVarWindowIterator (seqData windowSize = 10000, windowShift = 5000) var.info < -列表(variantInfo (iterator))我< - 2 (iterateFilter (iterator)) {var.info[[我]]< - variantInfo (iterator)我< - i + 1}拉普兰人(负责人var.info) seqResetFilter (seqData) # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块6号:迭代器。Rnw: 107 - 120 # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # gr < - GRangesList(农庄(seqnames =代表(22日2),范围= IRanges(开始= c (16 e6, 17 e6),宽度= 1 e6)),农庄(seqnames =代表(22日2),范围= IRanges(开始= c (18 e6, 20 e6),宽度= 1 e6)))迭代器< - SeqVarListIterator (seqData variantRanges = gr) var.info < -列表(variantInfo (iterator))我< - 2 (iterateFilter (iterator)) {var.info[[我]]< - variantInfo (iterator)我< - i + 1}拉普兰人(负责人var.info) # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块7号:迭代器。Rnw: 127 - 130 # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # variantInfo (iterator) resetIterator (iterator) variantInfo (iterator) # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块8号:迭代器。Rnw: 133 - 134 # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # seqClose (gds)