版本变化1.3.2重要用户可见的变化——connect_database内部提供的链接()已经更新,以联系的最新版本regulonDB v10.8。1.3.1版本的BUG修复的变化——固定数据库的URL。解决了https://github.com/ComunidadBioInfo/regutools/issues/33。版本1.1.3重要用户可见的变化变化——现在的包引用文件已经更新,在线论文regutools https://academic.oup.com/bioinformatics/advance-article-abstract/doi/10.1093/bioinformatics/btaa575/5861528 DOI 10.1093 /生物信息学btaa575 PMID: 32573705。文档更新——roxygen版本更新包括建立新roxygen版本和文档。1.1.1版重要用户可见的变化变化——现在的包引用文件已经更新的预印regutools DOI https://doi.org/10.1101/2020.04.29.068551 https://www.biorxiv.org/content/10.1101/2020.04.29.068551v1。版本变化0.99.14用户可见的重大变化——现在connect_database范克廉()作为参数,而不是路径。版本变化0.99.13用户可见的重大变化——现在connect_database()使用BiocFileCache:: BiocFileCache()和BiocFileCache:: bfcrpath()下载数据库从Dropbox的时候不是可以从AnnotationHub::查询()和缓存文件所以你不用重新下载它很多次了。版本变化0.99.12重要用户可见的变化——文档网站现在可以在http://comunidadbioinfo.github.io/regutools/。它被更新主分支上的每一个承诺(bioc-devel)使用GitHub行动和pkgdown。 Changes in version 0.99.11 BUG FIXES - Manual adjustment for lines > 80 chr in parameters description. Changes in version 0.99.10 BUG FIXES - Bump Version to run R CMD check Changes in version 0.99.9 BUG FIXES - Add a suggested biocView Transcription. Changes in version 0.99.8 BUG FIXES - Change biocViews from AnnotationData to Software Changes in version 0.99.7 BUG FIXES - Fix a bug in pkgdown that is currently resolved by Rscript -e 'remotes::install_github("r-lib/pkgdown#1276")'. Details at https://github.com/r-lib/pkgdown/pull/1276 and related issues. Changes in version 0.99.6 BUG FIXES - Manual adjust for some lines > 80 characters Changes in version 0.99.5 BUG FIXES - Reindent lines and try line-wrapping for lines > 80 characters Changes in version 0.99.4 NEW FEATURES - Added a NEWS.md file to track changes to the package. Changes in version 0.99.3 SIGNIFICANT USER-VISIBLE CHANGES - DESCRIPTION file now contains an article-like summary in the field regutools package Description. - DESCRIPTION was updated to show only one maintainer as required by //www.anjoumacpherson.com/developers/package-guidelines/#description BUG FIXES - Fix a bug in the function get_regulatory_network() related with Cytoscape conection. Changes in version 0.99.2 SIGNIFICANT CHANGES - Removed the regutools.Rproj file (you can still have it, but it's not version controlled). - Bump R depends to 4.0 as required by BiocCheck. We'll see if it breaks. Changes in version 0.99.1 BUG FIXES - Address as many errors, warnings and notes as possible from //www.anjoumacpherson.com/spb_reports/regutools_buildreport_20200302121040.html#malbec2_check_anchor. For the Windows error, it's likely related to mode = "w" versus mode = "wb" for utils::download.file() as in https://github.com/LieberInstitute/spatialLIBD/commit/7ac24dc72cc75e42c9af8382c661517f4a64f08d. Changes in version 0.99.0 NEW FEATURES - Submitted to Bioconductor