版本变化1.19.1 - - - - - - - - - - - - - - - - - - - - - - - - - o autoplot方法支持新特性现在EnsDb对象和相关过滤对象。版本变化1.5.16 - - - - - - - - - - - - - - - - - - - - - - - - o ggplot通用方法添加新特性。o模具成型对象添加到data.frame通用方法。o支持ggplot(数据)+ stat_ *风格,原始数据被保存。o跟踪功能更新,API是加强的,情节和trakcs的实用程序可以控制属性。o autoplot现在支持:VCF SummarizedExperiments,矩阵,当基因位置,选择可视化的热图坐在基因组的位置。o主题可以定义基于跟踪的主题。o表意文字:支持+ xlim方法,在嵌入式跟踪时,自动更新放大区域。o把。情节SuumarizedExperiemnts和ExpressionSet补充道。 SIGNIFICANT USER-LEVEL CHANGES o align.plots is deprecated, alignPlots created Notes o updated website for ggbio: http://tengfei.github.com/ggbio manuals and vignettes and paper added CHANGES IN VERSION 1.1.8 ------------------------ NEW FEATURES o create lower level API and rewrite higher level API o new geom: geom_alignment, geom_chevron, geom_arch, geom_arrow, geom_arrowrect o redefined geom: geom_rect, geom_segment o new stat: stat_aggregate, stat_coverage, stat_mismatch, stat_gene, stat_table, stat_stepping o redefined stat: stat_identity o new layout: layout_circle, layout_karyogram o tracks function are more smart and with more accessors. o themes provided. o More supported object for autoplot: VCF, ExpressionSet, GenomicRangesList. SIGNIFICANT USER-LEVEL CHANGES o qplot changed to generic autoplot function. o argument use only "facets", no alias "facet_gr" or "facet" accepted. o plotMismatchSum will be replaced by stat_mismatch, or autoplot, BamFile. Notes o new website for ggbio: http://tengfei.github.com/ggbio hosting docs, tutorials and case study o pdf version vignette will not longer supported or just provide a short form.