释放的历史“刀”包= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =版本1.35.1[2022-08-31]:-修复:适应新UniProt.ws装饰图案的代码。版本1.27.1[2020-06-05]:修复乳沟规则谷酰基肽链内切酶在文档由于Mariia Chernigovskaya 报告这个错误。版本1.25.1[2019-12-30]:添加缺失的空间装饰图案。版本1.21.4[2018-12-26]:使用“https”超链接(在可能的情况下)。版本1.21.3[2018-12-26]:正确的乳沟规则“胃蛋白酶”和“pepsin1.3”。根据peptidecutter文档“pepsin1.3”更具体(劈开(FL))比“胃蛋白酶”(劈开[FLWY]);有关详细信息,请参阅https://github.com/sgibb/cleaver/issues/6。由于琼Manguy 报告这个错误。版本1.21.2[2018-11-03]:将装饰图案从Sweave rmarkdown。——另一个尝试修复链接在手册页以避免警告窗口。1.21.1版本[2018-11-01]:我ORCID添加到作者在描述字段。——修复手册页链接避免警告窗口。1.15.1版本[2017-06-08]:不考虑最后一个胺基酸裂解位点。“cleavageSites(“消”,自定义=“K”)的结果“整数()”,而不是“3”。由于之一Apurva对冲基金 报告这个问题。——删除多余的“missedCleavages”论点“cleavageSites”。版本1.13.2[2017-02-14]:使用“expect_equal”而不是“expect_identical”来避免失败的。“toluca2 revsequence“单元测试”(Mac OS X小牛(10.9.5)/ x86_64)。——添加“importFrom(统计,setNames)”名称空间。版本1.13.1[2017-01-04]:将GPL头从*。R文件。——删除无用的回复电话。1.5.3[2015-02-02]:更正版本——为UniProt taxId = 9606。ws在装饰图案。1.5.1版本[2015-01-24]:添加测试用例如果数量的乳沟网站的数量小于允许错过了分裂。版本1.3.8[2014-09-28]:使用标题“标题:”字段的描述文件。版本1.3.7[2014-05-08]:创建一个IRangesList使用“分割”而不是“拉普兰人”cleavageRanges, AAStringSet-method是超过两倍。 Version 1.3.6 [2014-05-03]: - Add cleavageRanges method for character, AAString and AAStringSet. - cleave,AAString returns an AAStringSet instead of an AAStringSetList object. - Fix return value of cleavageSites,AAStringSet. Version 1.3.5 [2014-04-30]: - Fix defintion of cleavageSites,AAStringSet. Version 1.3.4 [2014-04-30]: - Add cleavageSites method for character, AAString and AAStringSet. Version 1.3.3 [2014-04-28]: - Avoid duplicated digest of peptides results in a hugh speed improvement and a hugh memory reduction (removes fix from 1.1.8 and partly reintroduces original algorithm). - Remove memory test and "memoryThreshold" argument (fails on different platforms and is not important anymore using the "new" cleavage algorithm). - Change default of "unique" argument to "unique=TRUE". Version 1.3.2 [2014-04-25]: - Introduce simple memory test and "memoryThreshold" argument to avoid the calculation of ridiculous high numbers of "missedCleavages" and peptide combinations. Version 1.3.1 [2014-04-25]: - Add "custom" argument to allow the user defining own cleavage rules. Version 1.1.8 [2014-03-26]: - Fix missedCleavages>1. - Add argument "unique". - Add methods, Biostrings, IRanges to NAMESPACE. Version 1.1.7 [2014-03-25]: - Typo in the manual page. Version 1.1.5 [2014-02-25]: - Using AAStringSetList constructor for list of characters instead of creating a lot of AAStringSets dramatically decreases running time for cleave,AAStringSet-method. Version 1.1.4 [2013-12-20]: - tests: - move tests into tests/testthat to adapt to testthat 0.8 and new CRAN policy. Version 0.99.5 [2013-07-24]: - vignette: - remove duplicated sessionInfo entries. Version 0.99.4 [2013-07-23]: - vignette: - use BiocStyle. - add sessionInfo() and TOC. Version 0.99.3 [2013-07-08]: - vignette: add second BRAIN reference. Version 0.99.2 [2013-06-17]: - Replace own AAStringSetList constructor by Biostrings::AAStringSetList. - man/cleaver-package.Rd: remove static date. - vignette: add dynamic date and don't load Biostrings manually anymore. - NAMESPACE: don't import from Biostrings and IRanges. Version 0.99.1 [2013-05-30]: - Add S4-methods for character, AAString, AAStringSet. - man/cleave-methods.Rd: split table of cleavage rules to reduce table width. - Extend vignette (add BRAIN and UniProt.ws based examples). Version 0.99.0 [2013-04-27]: - Initial release.