1.21.1版本的变化- - - - - - - - - - - - - - - - - - - - - - - - - BUG修复o固定运用rnorvegicus_gene_ensembl主机。使用默认主机现在而不是may2012.archive.ensembl.org。版本1.14.2变化- - - - - - - - - - - - - - - - - - - - - - - - - o修正BUG修复格式检查实验。表:空间不再除外,因为他们会导致下游错误。1.14.1版本的变化- - - - - - - - - - - - - - - - - - - - - - - - - BUG修复o兼容性更新:取代类()检查()。1.13.1版本的变化- - - - - - - - - - - - - - - - - - - - - - - - - BUG修复o兼容性更新:取代弃用fetchExtendedChromInfoFromUCSC与getChromInfoFromUCSC () ()。1.11.1版本的变化- - - - - - - - - - - - - - - - - - - - - - - - -修正o错误修复错误时输出空univariateHMM山峰。1.9.2版本的变化- - - - - - - - - - - - - - - - - - - - - - - -修正o错误修复错误时输出空峰列表。版本是1.7.2变化- - - - - - - - - - - - - - - - - - - - - - - -修正o兼容新版本的补丁ggplot2 (3.0.0)。o seqlevels()小于binsize下跌正常fixedWidthBins()和variableWidthBins ()。1.5.3 - - - - - - - - - - - -更正版本的变化- - - - - - - - - - - -重要用户级o函数变化的changePostCutoff()的单变量调用峰值没有工作后需要礼物。 CHANGES IN VERSION 1.5.1 ------------------------ SIGNIFICANT USER-LEVEL CHANGES o New column 'maxPostInPeak' containing the maximum posterior within each peak. o Score in exported BED files is calculated as -10*log10(maxPostInPeak). o 'changeFDR()' was renamed to 'changeMaxPostCutoff()'. CHANGES IN VERSION 1.3.1 ------------------------ NEW FEATURES o New parameter 'stepsize' allows sliding bins. This improves localization of peaks. SIGNIFICANT USER-LEVEL CHANGES o New default value for Chromstar(..., stepsize = 1/2 * binsize). CHANGES IN VERSION 1.1.4 ------------------------ BUG FIXES o Fixed a mistake in the calculation of differential scores from version 1.1.2 CHANGES IN VERSION 1.1.2 ------------------------ NEW FEATURES o Proper print() methods for all objects. BUG FIXES o Fixed a bug where chromosomes with a single bin were making problems. CHANGES IN VERSION 1.1.1 ------------------------ NEW FEATURES o Selection of peaks can be done with 'changeFDR'. o Peak calls are available in each chromstaR-object as list entry '$peaks'. SIGNIFICANT USER-LEVEL CHANGES o 'plotFoldEnrichment' renamed to 'plotEnrichment'. o 'exportBinnedData', 'exportUnivariates', 'exportMultivariates', 'exportCombinedMultivariates' replaced by 'exportCounts', 'exportPeaks', 'exportCombinations'. BUG FIXES o Proper computation of fold enrichments, with < 1 indicating depletion and > 1 indicating enrichment. DEPRECATED AND DEFUNCT o 'changePostCutoff'. o 'plotFoldEnrichment'. o 'exportBinnedData', 'exportUnivariates', 'exportMultivariates', 'exportCombinedMultivariates'.