1.9版更改o修正了bumphunter引导方法中的错误。计算推理的系数总是2，而不是作为参数传递的系数coef。1.3版的变化修正了命名空间的问题。o nearestgene()现在加载TT。rda到本地环境o known_transcripts()，因此matchGenes()，对Refseq / 'annotation'列产生的大部分是NA(如果给定的Entrez/Gene id有多个Refseq id) o固定数据/TT。Rda，作为known_transcripts()的新值。o清理新闻。o在DESCRIPTION中添加了GitHub URL。o清理重复建议:。1.1版本的变化o增加了新闻文件。修正了数字>=的错误。 o Added smoothing using a gaussian kernal as implemented in the locfit package through the function locfitByCluster. o Added closeSockets for cleanup for doParallel on Windows. o More bugfixes for windows; now using foreachCleanup(). o Added a 'bumps' class and print method. o annotateNearest / regionMatch now give NA annotations for queries with no nearest subject (perhaps because the seqname is missing from the subject). Previously this was taken to be mistaken input and a hard error raised. o Speedup of fwer computations using foreach. o Added boundedClusterMaker. o bug fix to internal function .getModT (which are not used in the main bumphunter functions). Now the t-statistics returned a correct.