1.36.99 o版本改进的版本号变化改变以反映Bioconductor库版本变化1.5.11 o提高annmap - 121数据现在缓存在一个专门的目录,而不是在主目录o提高annmap - 121项目的url和数据库更新的下载位置变化版本改善了annmap 1.5.10 o - 121年允许WS基url设置为本地测试版本的变化1.5.8 o改进annmap - 119。向量= TRUE结果现在叫o提高annmap - 120 genomeToTranscriptCoords可以处理编码区域的变化版本1.5.7 o错误检查transcriptToCodingExon独特性,transcriptToCodingRange transcriptToUtrExon transcriptToUtrRange变化版本1.5.6 o新添加transcriptToUtrExon o提高序列删除transcriptToCodingExon 1.5.5 o版本变化改善annmap geneToGeneRegionTrack - 115添加方法生成的列表Gviz GeneRegionTrack元素可以通过plotTracks版本变化1.5.4 o BUG annmap - 118 transcriptToCodingRange (…结束= ' 3 ')返回完整的成绩单翻译成绩单。o提高annmap - 114添加额外的日志记录时使用的webservice o提高annmap - 116介绍函数(s)来计算一个基因的编码长度(s) -看到:? nonIntronicGeneLength和nonIntronicTranscriptLength ?。1.5.3 o更正版本变化改善annmap - 114添加额外的日志记录时使用的webservice o改进annmap - 113添加文档食谱webservice o改善webservice json data.frame速度提升的变化版本1.2.1 o BUG annmap - 112 transcriptCoordsToGenome和proteinCoordsToGenome失败时返回一个农庄对象链作为一个数值,而不是整数。1.1.1 o版本变化改善genomicPlot当通过.genes data.frame用来调用geneDetails上确保正确格式的数据。这已被删除,您可以通过自定义的地区,让他们绘制的图。版本变化0.99.3 o BUG annmap - 110 XXXInRange (NULL)用于抛出一个错误。现在返回NULL。o BUG annmap - 111修复崩溃当翻译的数据是错误的,导致我们翻译外显子脱落时发现UTR /编码范围。版本变化0.99.2 o BUG annmap - 109 geneToSymbol通过向量的基因id时,返回的基因开始位置的符号的顺序而不是订单的函数被调用。 Changes in version 0.99.1 o BUG ANNMAP-101 ngsBridgePlot called with no genes in range had a huge border. o BUG ANNMAP-106 Empty ngsBridgePlot trace should draw line at 0. o BUG ANNMAP-107 transcriptToCodingRange was very slow. Changes in version 0.99.0 o NEW Initial Release to Bioconductor o BUG ANNMAP-98 A call to transcriptToTranslatedprobes for transcripts in HPRT1 caused a crash Changes in version 0.9.16 o BUG ANNMAP-97 geneToExonProbeset threw an error when as.vector=TRUE Changes in version 0.9.15 o NEW ANNMAP-94 Added annmapAddConnection method for setting up databases. Changes in version 0.9.14 o NEW ANNMAP-90 Added generateBridgeData method for helping with BAM file imports. o IMPROVED ANNMAP-93 Refactored out some NCBI->Ensembl seqname mapping functions. o IMPROVED ANNMAP-84 Added ngsBridgePlot examples to the cookbook. Changes in version 0.9.13 o IMPROVED ANNMAP-78 Cookbook now appears when vignette( package='annmap' ) is called. Changes in version 0.9.12 o IMPROVED ANNMAP-74, ANNMAP-75, ANNMAP-76; Fixed warnings and notes when using R-2.15 Changes in version 0.9.11 o IMPROVED ANNMAP-73 Methods generalisedNameToNCBI, generalisedNameToEnsembl, seqnameMapping, seqnamesToNCBI and seqnamesToEnsembl added to allow easy renaming of the seqnames column of GRanges data. Changes in version 0.9.10 o IMPROVED ANNMAP-71 Bug in geneToSymbol fixed Changes in version 0.9.9 o IMPROVED ANNMAP-63 We now use GenomicRanges instead of IRanges Changes in version 0.9.8 o IMPROVED ANNMAP-58 Added 4 pos translation documentation to cookbook o BUG ANNMAP-60 Webservice tests were failing o BUG ANNMAP-54 geneToExonProbeset didn't support as.vector Changes in version 0.9.7 o BUG ANNMAP-48 Error in proteinCoordsToGenome in annmap o BUG ANNMAP-47 annmapGenePlot fails to show individual transcripts o IMPROVED ANNMAP-45 Added a NEWS.Rd file to inst Changes in version 0.9.6 o BUG Fixed ANNMAP-44; genomicPlot crashes when called with very small overlapped areas Changes in version 0.9.5 o IMPROVED ANNMAP-41; All InRange methods are now S3 methods which work with character, data.frame or RangedData (see ?annmap.range). o IMPROVED ANNMAP-42; genomicPlot highlights 'colour' column is now 'col' as with all other methods. o BUG ANNMAP-40; genomicPlot crashes if highlights data.frame has unexpected columns.