版本1.10.0中的变化------------------------ o错误修复和文档改进版本1.8.0中的变化------------------------ o错误修复和其他改进版本1.6.0中的变化------------------------ o新的小插图o sgvariables和SGVariantCounts类的变化。使用以前版本的SGSeq创建的实例必须更新。o在样本信息中支持bamfilelist。o在分配基因名称时改变注解()函数的行为。o在analyzeVariants()和getSGVariantCounts()中改变min_分母参数的行为。现在必须在事件开始或结束时达到指定的最小计数。相邻外显子不再引起converttoxfeatures()的警告TxVariantCounts o Bug修复和其他改进版本1.4.0的变化 ------------------------ o添加importTranscripts()进口人造石铺地面的注释格式添加plotCoverage阿()的可视化每读覆盖率和结读计数o添加predictVariantEffects()预测剪接变异的影响带注释的蛋白质编码转录o findSGVariants()现在可以处理更复杂的基因模型o SGVariants列closed5p现在closed3p参考to individual splice variants rather than the splice event they belong to o Bug fixes and other improvements CHANGES IN VERSION 1.2.0 ------------------------ o Renamed class TxVariants to SGVariants o Renamed class TxVariantCounts to SGVariantCounts o Renamed findTxVariants() to findSGVariants() o Renamed getTxVariantCounts() to getSGVariantCounts() o Parallelization is now controlled with a single cores argument o Argument max_complexity for predictTxFeatures() controls skipping of problematic regions o getBamInfo() is no longer run as part of analyzeFeatures() o getSGVariantCounts() now supports obtaining counts from BAM files o Bug fixes and other improvements