1.7版本的变化QFeatures 1.7.3 -修复:固定filterFeatures当选择包含环境变量QFeatures 1.7.2 -壮举:结合QFeatures对象添加“c”方法。-壮举:添加nrows和ncols方法。还添加了use.names论点(cf ? BiocGenerics:: dim) - docs:改进文档filterFeatures()——测试:为filterFeatures提高单元测试()——的壮举:添加了一个参数保持在filterFeatures()来控制是否保留或删除功能不包含筛选变量的分析。还添加了消息打印到一个更好的概述的变量被发现。-修复:固定addAssay # 104()来解决问题。重构:重构addAssay()和显著提高计算资源的使用。-壮举:colData自动转移从试验到QFeatures对象。专长:实现removeAssay()和replaceAssay ()。一起addAssay(),这些函数是用来实现所需要的替换方法[[< -解决问题# 57。——添加使用cc许可的小品文。 QFeatures 1.7.1 - refactor: imputation now adds a new assay instead of replacing values. QFeatures 1.7.0 - New Bioc devel version. Changes in version 1.5 QFeatures 1.5.3 - feat: aggregation by adjacency matrix - New adjacencyMatrix,SummarizedExperiment and adjacencyMatrix,QFeatures methods using ProtGenerics::adjacencyMatrix (available in version >= 1.27.1). QFeatures 1.5.2 - fix: implemented an updateObject() method for QFeatures objects. QFeatures 1.5.1 - Document the use of peptide/protein adjacency matrices in aggregateFeatures() and new adjacencyMatrix() accessor. QFeatures 1.5.0 - New devel version (Bioc 3.15) Changes in version 1.3 QFeatures 1.3.6 - New feat3 example data to demonstrate and test more complex AssayLinks structure. - Improved the plot,QFeautres function to avoid cluttering of nodes. - Adapted the visualization vignette using feat3. QFeatures 1.3.5 - Add plot,QFeatures and visualisation vignette. QFeatures 1.3.4 - Fixed bug that produced invalid AssayLinks when using filterNA. QFeatures 1.3.3 - Improved validity checks on AssayLinks - Fixed the subsetting of AssayLinks to ensure consistent data QFeatures 1.3.2 - Add logo to package - Fix class coercion error (see #b9ce7f1e9) QFeatures 1.3.1 - Added rbindRowData: a function to select variables in the rowData and bind it in a single DataFrame - Added rowData<-: this new method replaces replaceRowDataCols to offer a more standardize functionality. - Added a new section in the QFeatures vignette to expand on how to manipulate the metadata within a QFeatures object QFeatures 1.3.0 - New devel version (Bioc 3.14) Changes in version 1.2.0 QFeatures 1.2.0 - New release version (Bioc 3.13) Changes in version 1.1.0 QFeatures 1.1.4 - Added replaceRowDataCols and removeRowDataCols, two functions to streamline manipulation of rowData within a QFeature object. QFeatures 1.1.3 - Added countUniqueFeatures, a function to count the number of unique features per sample. QFeatures 1.1.2 - Manually install preprocessCore (see https://github.com/Bioconductor/bioconductor_docker/issues/22 for details) to use quantile normalisation in vignette and tests. - Update vignette to show normalize() and logTransform() directly on a QFeatures object and reference the QFeaturesWorkshop2020 workshop and WSBIM2122 chap 8. QFeatures 1.1.1 - Fix typo in vignette - Improve first paragraph in intro vignette. QFeatures 1.1.0 - New Bioconductor devel version Changes in version 0.99 QFeatures 0.99.4 - Fix: improved nNA with new implementation and additional unit tests <2020-10-23 Fri> QFeatures 0.99.3 - New feature: the longFormat function returns a long DataFrame with quantitative data along with metadata (see #116) <2020-10-8 Thu> - New feature: the rowData method returns a list containing the rowData for all assays (see #86) <2020-09-16 Wed> - Keep colnames when reading a single column assay (see #108) <2020-09-09 Wed> QFeatures 0.99.2 - Added infIsNA. - Add Christophe Vanderaa as an author. QFeatures 0.99.1 - Address comments Bioconductor review (see submission issue for details. QFeatures 0.99.0 - Bioconductor submission