版本1.10.0 o的更改修复了seqinfo<-以支持泛型中的其他参数。修改了充气()行为与未指定的填充=为g交互对象。1.8.0版更改o更新了用于GInteractions对象的show()方法。o支持重复linkOverlaps()调用的Hits输入。设置忽略。默认情况下,strand=TRUE。o没有subject参数的findOverlaps()现在返回SortedBySelfQueryHits。1.6.0版更改o删除了InteractionSet的c()方法,GInteractions的rbind方法。o通用的ContactMatrix允许任何类型的矩阵类对象。o支持充气()为g交互不指定填充。 Changed default fill for InteractionSet to missing. o Separated subsetting and combining documentation into two different pages. o Added convenience wrappers for resize(), narrow() and shift() on the GenomicRanges slot in all objects. o Modified anchors() to return a list rather than GRangesList. o Modified width() for GInteractions to return a list() rather than a DataFrame(). Also changed names of list element. o Added the anchorIds() function for rapid extraction of anchor IDs. o Removed the requirement for identical regions in pcompare() and match(). Changes in version 1.4.0 o Deprecated anchors<- in favour of anchorIds<-, to avoid confusion about 'value' type. o Added first(), second() functions for convenience. o Updates to documentation, tests. Changes in version 1.2.0 o Allowed specification of NULL in row/column arguments to inflate(). o Fixes to tests and code in response to updates to BiocGenerics, S4Vectors. o Added CITATION to the F1000Res article. Changes in version 1.0.0 o New package InteractionSet, containing base classes for genomic interaction data.