pvac

DOI:10.18129/B9.bioc.pvac

PCA-based gene filtering for Affymetrix arrays

Bioconductor version: Release (3.16)

The package contains the function for filtering genes by the proportion of variation accounted for by the first principal component (PVAC).

Author: Jun Lu and Pierre R. Bushel

Maintainer: Jun Lu , Pierre R. Bushel

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("pvac")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation

查看文档的版本包age installed in your system, start R and enter:

browseVignettes("pvac")

PDF	R Script	PCA-based gene filtering for Affymetrix GeneChips
PDF		Reference Manual

Details

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Version	1.46.0
In Bioconductor since	BioC 2.8 (R-2.13) (12 years)
License	LGPL (>= 2.0)
Depends	R (>= 2.8.0)
Imports	affy(>= 1.20.0), stats,Biobase
LinkingTo
Suggests	pbapply,affydata,ALLMLL,genefilter
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Build Report

Package Archives

Followbob 体育网址 instructions to use this package in your R session.

Source Package	pvac_1.46.0.tar.gz
Windows Binary	pvac_1.46.0.zip
macOS Binary (x86_64)	pvac_1.46.0.tgz
macOS Binary (arm64)	pvac_1.46.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/pvac
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/pvac
Bioc Package Browser	https://code.bioconductor.org/browse/pvac/
Package Short Url	//www.anjoumacpherson.com/packages/pvac/
Package Downloads Report	Download Stats