microbiomeDASim

DOI:10.18129/B9.bioc.microbiomeDASim

Microbiome Differential Abundance Simulation

Bioconductor version: Release (3.16)

A toolkit for simulating differential microbiome data designed for longitudinal analyses. Several functional forms may be specified for the mean trend. Observations are drawn from a multivariate normal model. The objective of this package is to be able to simulate data in order to accurately compare different longitudinal methods for differential abundance.

Author: Justin Williams, Hector Corrada Bravo, Jennifer Tom, Joseph Nathaniel Paulson

Maintainer: Justin Williams

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("microbiomeDASim")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation

查看文档的版本包age installed in your system, start R and enter:

browseVignettes("microbiomeDASim")

PDF	R Script	microbiomeDASim
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	bob 体育平台下载 ,bob 体育平台下载 ,bob 体育平台下载
Version	1.12.0
In Bioconductor since	BioC 3.10 (R-3.6) (3 years)
License	MIT + fileLICENSE
Depends	R (>= 3.6.0)
Imports	graphics,ggplot2,MASS,tmvtnorm,Matrix,mvtnorm,pbapply, stats,phyloseq,metagenomeSeq,Biobase
LinkingTo
Suggests	testthat(>= 2.1.0),knitr,devtools
SystemRequirements
Enhances
URL	https://github.com/williazo/microbiomeDASim
BugReports	https://github.com/williazo/microbiomeDASim/issues
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Build Report

Package Archives

Followbob 体育网址 instructions to use this package in your R session.

Source Package	microbiomeDASim_1.12.0.tar.gz
Windows Binary	microbiomeDASim_1.12.0.zip
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/microbiomeDASim
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/microbiomeDASim
Bioc Package Browser	https://code.bioconductor.org/browse/microbiomeDASim/
Package Short Url	//www.anjoumacpherson.com/packages/microbiomeDASim/
Package Downloads Report	Download Stats