epivizrStandalone

DOI:10.18129/B9.bioc.epivizrStandalone

Run Epiviz Interactive Genomic Data Visualization App within R

Bioconductor version: Release (3.16)

This package imports the epiviz visualization JavaScript app for genomic data interactive visualization. The 'epivizrServer' package is used to provide a web server running completely within R. This standalone version allows to browse arbitrary genomes through genome annotations provided by Bioconductor packages.

Author: Hector Corrada Bravo, Jayaram Kancherla

Maintainer: Hector Corrada Bravo

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("epivizrStandalone")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation

查看文档的版本包age installed in your system, start R and enter:

browseVignettes("epivizrStandalone")

HTML		Introduction to epivizrStandalone
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	bob 体育平台下载 ,bob 体育平台下载 ,bob 体育平台下载 ,bob 体育平台下载
Version	1.26.0
In Bioconductor since	BioC 3.3 (R-3.3) (6.5 years)
License	MIT + fileLICENSE
Depends	R (>= 3.2.3),epivizr(>= 2.3.6), methods
Imports	git2r,epivizrServer,GenomeInfoDb,BiocGenerics,GenomicFeatures,S4Vectors
LinkingTo
Suggests	testthat,knitr,rmarkdown,OrganismDbi(>= 1.13.9),Mus.musculus,Biobase,BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	metavizr
Suggests Me	scTreeViz
Links To Me
Build Report

Package Archives

Followbob 体育网址 instructions to use this package in your R session.

Source Package	epivizrStandalone_1.26.0.tar.gz
Windows Binary	epivizrStandalone_1.26.0.zip
macOS Binary (x86_64)	epivizrStandalone_1.26.0.tgz
macOS Binary (arm64)	epivizrStandalone_1.26.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/epivizrStandalone
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/epivizrStandalone
Bioc Package Browser	https://code.bioconductor.org/browse/epivizrStandalone/
Package Short Url	//www.anjoumacpherson.com/packages/epivizrStandalone/
Package Downloads Report	Download Stats