Bioconductor version: Release (3.16)
The package is user friendly interface based on the cgdsr and other modeling packages to explore, compare, and analyse all available Cancer Data (Clinical data, Gene Mutation, Gene Methylation, Gene Expression, Protein Phosphorylation, Copy Number Alteration) hosted by the Computational Biology Center at Memorial-Sloan-Kettering Cancer Center (MSKCC).
Author: Karim Mezhoud. Nuclear Safety & Security Department. Nuclear Science Center of Tunisia.
Maintainer: Karim Mezhoud
Citation (from within R, entercitation("canceR")
):
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("canceR")
For older versions of R, please refer to the appropriateBioconductor release.
查看文档的版本包age installed in your system, start R and enter:
browseVignettes("canceR")
HTML | R Script | canceR: A Graphical User Interface for accessing and modeling the Cancer Genomics Data of MSKCC |
Reference Manual | ||
Text | NEWS |
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Version | 1.32.0 |
In Bioconductor since | BioC 3.1 (R-3.2) (8 years) |
License | GPL-2 |
Depends | R (>= 4.1), tcltk |
Imports | GSEABase,tkrplot,geNetClassifier,RUnit,Formula,rpart,survival,Biobase,phenoTest,circlize,plyr, graphics, stats, utils, grDevices,R.oo,R.methodsS3,httr |
LinkingTo | |
Suggests | testthat(>= 3.1),knitr,rmarkdown,BiocStyle |
SystemRequirements | Tktable, BWidget |
Enhances | |
URL | |
BugReports | https://github.com/kmezhoud/canceR/issues |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Followbob 体育网址 instructions to use this package in your R session.
Source Package | canceR_1.32.0.tar.gz |
Windows Binary | canceR_1.32.0.zip |
macOS Binary (x86_64) | canceR_1.32.0.tgz |
macOS Binary (arm64) | canceR_1.32.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/canceR |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/canceR |
Bioc Package Browser | https://code.bioconductor.org/browse/canceR/ |
Package Short Url | //www.anjoumacpherson.com/packages/canceR/ |
Package Downloads Report | Download Stats |
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