S4Vectors

DOI:10.18129 / B9.bioc.S4Vectors

Bioconductor中vector类和list类容器的基础

Bioconductor版本:发行版(3.15)

S4Vectors包定义了Vector和List虚拟类以及一组泛型函数,这些函数扩展了r中普通Vector和List的语义。包开发人员可以轻松地将类Vector或类列表对象实现为Vector或List的具体子类。bob电竞体育官网此外,在S4Vectors包本身中实现了一些普遍感兴趣的底层具体子类(例如DataFrame、Rle和Hits)(更多的子类在IRanges包和其他Bioconductor基础设施包中实现)。

作者:H. Pagès, M.劳伦斯和P.阿卜扬

维护者:Bioconductor包维护者< Bioconductor .org>的维护者

引用(从R中,输入引用(“S4Vectors”)):

安装

要安装此包,启动R(版本“4.2”)并输入:

如果(!install.packages("BiocManager") BiocManager::install("S4Vectors")

对于较老版本的R,请参考相应的Bioconductor释放

文档

要查看系统中安装的此包版本的文档,请从R开始并输入:

browseVignettes(“S4Vectors”)

PDF R脚本 快速浏览一下S4的班级系统
PDF R脚本 S4Vectors包的概述
PDF R脚本 Rle提示和技巧
PDF 参考手册
文本 新闻

细节

biocViews bob 体育平台下载 bob 体育平台下载 bob 体育平台下载
版本 0.34.0
在Bioconductor公司 bio 3.0 (R-3.1)(7.5年)
许可证 艺术- 2.0
取决于 R(>= 4.0.0),方法,utils, stats, stats4,BiocGenerics(> = 0.37.0)
进口
链接
建议 IRangesGenomicRangesSummarizedExperiment矩阵DelayedArrayShortReaddata.tableRUnitBiocStyle
SystemRequirements
增强了
URL //www.anjoumacpherson.com/packages/S4Vectors
BugReports https://github.com/Bioconductor/S4Vectors/issues
全靠我 altcdfenvsAnnotationHubDataATACseqQCbambubandleBiostringsBiSeqBRGenomicsBSgenomebumphunter红衣主教CellMapperCexoRchimeravizChIPCompChIPpeakAnnochipseqChIPseqRClassifyRcliProfiler食典委CompoundDbcoseqCSARCSSQDelayedArrayDelayedDataFrameDESeq2DEXSeqDirichletMultinomialDMCFBDMCHMMDMRcallerepigenomixepihetExperimentHubDataExpressionAtlasfCCACGA4GHclientgeneregulationGenoGAMGenomeInfoDbGenomicAlignmentsGenomicFeaturesGenomicRangesGenomicScoresGenomicTuplesGeomxToolsgirafegroHMMGvizHelloRangesInTAD感兴趣IRangesLinTIndLoomExperimentm6AboostMetNetMotifDbMSnbaseMuDataNADfinderNanoStringNCToolsNBAMSeq食人魔OTUbase莲花pd.agpd.aragene.1.0.stpd.aragene.1.1.stpd.ath1.121501pd.barley1pd.bovgene.1.0.stpd.bovgene.1.1.stpd.bovinepd.bsubtilispd.cangene.1.0.stpd.cangene.1.1.stpd.caninepd.canine.2pd.celeganspd.chickenpd.chigene.1.0.stpd.chigene.1.1.stpd.chogene.2.0.stpd.chogene.2.1.stpd.citruspd.clariom.d.humanpd.clariom.s.humanpd.clariom.s.human.htpd.clariom.s.mousepd.clariom.s.mouse.htpd.clariom.s.ratpd.clariom.s.rat.htpd.cottonpd.cyngene.1.0.stpd.cyngene.1.1.stpd.cyrgene.1.0.stpd.cyrgene.1.1.stpd.cytogenetics.arraypd.drogene.1.0.stpd.drogene.1.1.stpd.drosgenome1pd.drosophila.2pd.e.coli.2pd.ecolipd.ecoli.asv2pd.elegene.1.0.stpd.elegene.1.1.stpd.equgene.1.0.stpd.equgene.1.1.stpd.felgene.1.0.stpd.felgene.1.1.stpd.fingene.1.0.stpd.fingene.1.1.stpd.genomewidesnp.5pd.genomewidesnp.6pd.guigene.1.0.stpd.guigene.1.1.stpd.hc.g110pd.hg.focuspd.hg.u133.plus.2pd.hg.u133apd.hg.u133a.2pd.hg.u133a.tagpd.hg.u133bpd.hg.u219pd.hg.u95apd.hg.u95av2pd.hg.u95bpd.hg.u95cpd.hg.u95dpd.hg.u95epd.hg18.60mer.exprpd.ht.hg.u133.plus.pmpd.ht.hg.u133apd.ht.mg.430apd.hta.2.0pd.hu6800pd.huex.1.0.st.v2pd.hugene.1.0.st.v1pd.hugene.1.1.st.v1pd.hugene.2.0.stpd.hugene.2.1.stpd.maizepd.mapping250k.nsppd.mapping250k.stypd.mapping50k.hind240pd.mapping50k.xba240pd.margene.1.0.stpd.margene.1.1.stpd.medgene.1.0.stpd.medgene.1.1.stpd.medicagopd.mg.u74apd.mg.u74av2pd.mg.u74bpd.mg.u74bv2pd.mg.u74cpd.mg.u74cv2pd.mirna.1.0pd.mirna.2.0pd.mirna.3.0pd.mirna.4.0pd.moe430apd.moe430bpd.moex.1.0.st.v1pd.mogene.1.0.st.v1pd.mogene.1.1.st.v1pd.mogene.2.0.stpd.mogene.2.1.stpd.mouse430.2pd.mouse430a.2pd.mta.1.0pd.mu11ksubapd.mu11ksubbpd.nugo.hs1a520180pd.nugo.mm1a520177pd.ovigene.1.0.stpd.ovigene.1.1.stpd.pae.g1apd.plasmodium.anophelespd.poplarpd.porcinepd.porgene.1.0.stpd.porgene.1.1.stpd.rabgene.1.0.stpd.rabgene.1.1.stpd.rae230apd.rae230bpd.raex.1.0.st.v1pd.ragene.1.0.st.v1pd.ragene.1.1.st.v1pd.ragene.2.0.stpd.ragene.2.1.stpd.rat230.2pd.rcngene.1.0.stpd.rcngene.1.1.stpd.rg.u34apd.rg.u34bpd.rg.u34cpd.rhegene.1.0.stpd.rhegene.1.1.stpd.rhesuspd.ricepd.rjpgene.1.0.stpd.rjpgene.1.1.stpd.rn.u34pd.rta.1.0pd.rusgene.1.0.stpd.rusgene.1.1.stpd.s.aureuspd.soybeanpd.soygene.1.0.stpd.soygene.1.1.stpd.sugar.canepd.tomatopd.u133.x3ppd.vitis.viniferapd.wheatpd.x.laevis.2pd.x.tropicalispd.xenopus.laevispd.yeast.2pd.yg.s98pd.zebgene.1.0.stpd.zebgene.1.1.stpd.zebrafishplethyPSMatchRcwlRegEnrichRepVizRNAmodRRnBeadsscATAC。资源管理器scDatavizsegmentSeqSeqGateSNPlocs.Hsapiens.dbSNP141.GRCh38光谱SQLDataFrameStructstringsSummarizedBenchmarkTimeSeriesExperimenttopdownrTreeSummarizedExperiment一绺头发三层updateObjectVariantExperimentVariantTools火神XtraSNPlocs.Hsapiens.dbSNP141.GRCh38XVector
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建议我 AlpsNMRalternativeSplicingEvents.hg19alternativeSplicingEvents.hg38BiocGenericsBioPlexconcluscuratedAdipoChIPcuratedAdipoRNAdearseqepivizrChartglobalSeqGWASToolsGWENA杂环胺maftools马提尼MicrobiotaProcessMungeSumstatsObMiTiRTCGA关注的焦点TFEA。芯片TFutilstidybulktravizxcoredata
给我的链接 Biostringscn解读DegNormDelayedArrayGenomicAlignmentsGenomicRangesHDF5ArrayIRanges烤肉串MatrixRiderRsamtoolsrtracklayerShortReadStructstrings三层VariantAnnotationVariantFilteringXVector
构建报告

包档案

遵循bob 体育网址 在R会话中使用这个包的说明。

源包 S4Vectors_0.34.0.tar.gz
Windows二进制 S4Vectors_0.34.0.zip
macOS 10.13 (High Sierra) S4Vectors_0.34.0.tgz
源库 git clone https://git.bioconductor.org/packages/S4Vectors
源存储库(开发人员访问) git克隆git@git.bioconductor.org:packages/S4Vectors
包短Url //www.anjoumacpherson.com/packages/S4Vectors/
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