PanomiR

DOI:10.18129/B9.bioc.PanomiR

Detection of miRNAs that regulate interacting groups of pathways

Bioconductor版本:版本(3.15)

PanomiR is a package to detect miRNAs that target groups of pathways from gene expression data. This package provides functionality for generating pathway activity profiles, determining differentially activated pathways between user-specified conditions, determining clusters of pathways via the PCxN package, and generating miRNAs targeting clusters of pathways. These function can be used separately or sequentially to analyze RNA-Seq data.

Author: Pourya Naderi [aut, cre], Yue Yang (Alan) Teo [aut], Ilya Sytchev [aut], Winston Hide [aut]

Maintainer: Pourya Naderi

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("PanomiR")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation

查看documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PanomiR")

HTML	R Script	PanomiR Tutorial
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	bob 体育平台下载 ,bob 体育平台下载 ,bob 体育平台下载 ,bob 体育平台下载 ,bob 体育平台下载 ,bob 体育平台下载
Version	1.0.2
In Bioconductor since	BioC 3.15 (R-4.2) (< 6 months)
License	MIT + fileLICENSE
Depends	R (>= 4.2.0)
Imports	clusterProfiler,dplyr,forcats,GSEABase,igraph,limma,metap,org.Hs.eg.db, parallel,preprocessCore,RColorBrewer,rlang,tibble,withr, utils
LinkingTo
Suggests	testthat(>= 3.0.0),BiocStyle,knitr,rmarkdown
SystemRequirements
Enhances
URL	https://github.com/pouryany/PanomiR
BugReports	https://github.com/pouryany/PanomiR/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Followbob 体育网址 instructions to use this package in your R session.

Source Package	PanomiR_1.0.2.tar.gz
Windows Binary	PanomiR_1.0.2.zip
macOS Binary (x86_64)	PanomiR_1.0.2.tgz
Source Repository	git clone https://git.bioconductor.org/packages/PanomiR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/PanomiR
Package Short Url	//www.anjoumacpherson.com/packages/PanomiR/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.15	Source Archive