绞喉

DOI:10.18129 / B9.bioc.IRanges

生物导体中整数范围操作的基础

Biocometiond版本:释放(3.12)

提供高效的低级和高度可重复使用的S4类,用于存储,操纵和聚合整数的注释范围。实现范围操作的代数,包括用于查找重叠和最近邻居的有效算法。定义有效的列表类似的类,用于存储,转换和聚合大型分组数据,即原子向量和DataFrame的集合。

作者:H. Pagès, P. Aboyoun和M. Lawrence

Maintainer: Bioconductor Package Maintainer < Maintainer at Bioconductor。org>

引文(从R中输入引用(“IRanges”)):

安装

要安装此包,请启动R(版本“4.0”)并输入:

if(!qualocamespace(“biocmanager”,静静= true))install.packages(“biocmanager”)biocmanager ::安装(“陨铁”)

有关较旧版本的R,请参阅适当的Bioconductor释放

文档

要查看系统中安装的软件包版本的文档,请启动R并输入:

browseVignettes(“IRanges”)

PDF R脚本 IRanges包概述
PDF 参考手册
文本 新闻

细节

biocViews bob 体育平台下载 ,bob 体育平台下载 ,bob 体育平台下载
版本 2.24.1
Bioconductor自 BioC 2.3 (R-2.8)(12年)
许可证 艺术- 2.0
取决于 R(>= 4.0.0)、methods、utils、stats、BiocGenerics(> = 0.36.0),S4Vectors(> = 0.27.12)
进口 stats4
链接 S4Vectors
建议 XVector,GenomicRanges,Rsamtools,GenomicAlignments,GenomicFeatures,BSgenome.Celegans.UCSC.ce2,pasillaBamSubset,RUnit,BiocStyle
SystemRequirements
增强了
URL //www.anjoumacpherson.com/packages/IRanges
BugReports https://github.com/Bioconductor/IRanges/issues
取决于我 AnnotationDbi,AnnotationHubData,BaalChIP,bambu,biomvRCNS,Biostrings,BiSeq,BSgenome,BubbleTree,bumphunter,咖啡馆,卡斯珀,CexoR,Chimeraviz,ChIPComp,ChIPpeakAnno,chipseq,食典委,consensusSeekeR,CSAR,CSSQ,customProDB,deepSNV,delayedarray,DESeq2,DEXSeq,DirichletMultinomial,DMCFB,DMCHMM,DMRcaller,epigenomix,表演,ExCluster,exomeCopy,fCCAC,FunciSNP.data,geneRxCluster,genomeinfodb.,GenomicAlignments,GenomicFeatures,GenomicRanges,groHMM,gtrellis,Gviz,harbChIP,HelloRanges,hit,IdeoViz,InTAD,LiebermanAidenHiC2009,methyAnalysis,MotifDb,NADfinder,orfik.,OTUbase,pd.ag,pd.aragene.1.0.st,pd.aragene.1.1.st,pd.ath1.121501,PD.Barley1.,pd.bovgene.1.0.st.st.,pd.bovgene.1.1.st,pd.bovine,pd.bsubtilis,pd.cangene.1.0.st,pd.cangene.1.1.st,pd.canine,pd.canine.2,pd.celegans,pd.chicken,pd.chigene.1.0.st,pd.chigene.1.1.st,pd.chogene.2.0.st,pd.chogene.2.1.st,pd.citrus,pd.clariom.d.human,pd.clariom.s.human,pd.clariom.s.human.ht,pd.clariom.s.mouse,pd.clariom.s.mouse.ht,pd.clariom.s.rat,pd.clariom.s.rat.ht,pd.cotton,pd.cyngene.1.0.st,pd.cyngene.1.1.st,pd.cyrgene.1.0.st,pd.cyrgene.1.1.st,pd.cytogenetics.array,pd.drogene.1.0.st,pd.drogene.1.1.st,pd.drosgenome1,pd.drosophila.2,pd.e.coli.2.,pd.ecoli,pd.ecoli.asv2.,pd.elegene.1.0.st,pd.elegene.1.1.st,pd.equgene.1.0.st,pd.equgene.1.1.st,pd.felgene.1.0.st,pd.felgene.1.1.st,pd.fingene.1.0.st,pd.fingene.1.1.st,pd.genomewidesnp.5,pd.genomewidesnp.6,pd.guigene.1.0.st,pd.guigene.1.1.st,pd.hc.g110,pd.hg.focus,pd.hg.u133.plus.2,pd.hg.u133a,pd.hg.u133a.2,pd.hg.u133a.tag,pd.hg.u133b,pd.hg.u219,pd.hg.u95a,pd.hg.u95av2,pd.hg.u95b,pd.hg.u95c,pd.hg.u95d,pd.hg.u95e,pd.hg18.60mer.expr.,pd.ht.hg.u133.plus.pm,pd.ht.hg.u133a,pd.ht.mg.430a,pd.hta.2.0,pd.hu6800,pd.huex.1.0.st.v2,pd.hugene.1.0.st.v1,pd.hugene.1.1.st.v1,pd.hugene.2.0.st,pd.hugene.2.1.st,pd.maize.,pd.mapping250k.nsp,pd.mapping250k.sty,pd.mapping50k.hind240,pd.mapping50k.xba240,pd.margene.1.0.st,pd.margene.1.1.st,pd.medgene.1.0.st,pd.medgene.1.1.st,pd.medicago,pd.mg.u74a.,pd.mg.u74av2.,pd.mg.u74b.,pd.mg.u74bv2,pd.mg.u74c.,pd.mg.u74cv2,pd.mirna.1.0,pd.mirna.2.0,pd.mirna.3.0,pd.mirna.4.0,pd.moe430a,pd.moe430b,pd.moex.1.0.st.v1,pd.mogene.1.0.st.v1,pd.mogene.1.1.st.v1,pd.mogene.2.0.st,pd.mogene.2.1.st.st.,pd.mouse430.2,pd.mouse430a.2,pd.mta.1.0,pd.mu11ksuba,pd.mu11ksubb,pd.nugo.hs1a520180,pd.nugo.mm1a520177,pd.ovigene.1.0.st,pd.ovigene.1.1.st,pd.pae.g1a.,pd.plasmodium.anopheles,pd.poplar,pd.porcine,pd.porgene.1.0.st,Pd.porgene.1.1.st.st.,pd.rabgene.1.0.st,pd.rabgene.1.1.st.st.,pd.rae230a,pd.rae230b,pd.raex.1.0.st.v1,pd.ragene.1.0.st.v1,pd.ragene.1.1.st.v1,pd.ragene.2.0.st,pd.ragene.2.1.st,pd.rat230.2,pd.rcngene.1.0.st,pd.rcngene.1.1.st,pd.rg.u34a,pd.rg.u34b,pd.rg.u34c,pd.rhegene.1.0.st,pd.rhegene.1.1.st,pd.rhesus,pd.rice,pd.rjpgene.1.0.st.st.,pd.rjpgene.1.1.st,pd.rn.u34.,pd.rta.1.0,pd.rusgene.1.0.st,pd.rusgene.1.1.st,pd.s.aureus,pd.soybean,pd.soygene.1.0.st,pd.soygene.1.1.st,pd.sugar.cane,pd.tomato,pd.u133.x3p,pd.vitis.vinifera,pd.kwheat.,pd.x.laevis.2,pd.x.tropicalis,pd.xenopus.laevis,pd.yeast.2,pd.yg.s98,pd.zebgene.1.0.st,pd.zebgene.1.1.st.st.st.,pd.zebrafish,pepStat,季节性ddna.,PGA,plyranges,proBAMr,Psicquic.,RepViz,rfPred,rGADEM,rGREAT,RJMCMCNucleosomes,RNAmodR,Scale4C,范围,scsR,SGSeq,SICtools,SNPlocs.Hsapiens.dbSNP.20101109,SNPlocs.Hsapiens.dbSNP.20120608,SNPlocs.Hsapiens.dbSNP141.GRCh38,SNPlocs.Hsapiens.dbSNP142.GRCh37,Structstrings,TEQC,拖拉器,三层,VariantTools,VplotR,XtraSNPlocs.Hsapiens.dbSNP141.GRCh38,XVector
进口我 ALDEx2,等位基因矛纪,高山,amplican,AneuFinder,annmap,annotatr,appreci8R,ArrayExpressHTS,ArrayTV,ASpediaFI,Aspli.,AssessORF,ATACseqQC,舞会礼服,Bamsignals.,BasicSTARRseq,Bbcanalyzer.,beadarray,BiocOncoTK,biovizBase,BiSeq,BitSeq,bnbc,BPRMeth,分歧点,断点,BRGenomics,BSgenome,BSSeq.,BUMHMM,BUSpaRse,CAGEfightR,篮球选手,cBioPortalData,cgdv17,负责,别致的,ChIPanalyser,chipenrich,chipenrich.data,ChIPexoQual,ChIPQC,ChIPseeker,chipseq,ChIPseqR,ChIPSeqSpike,ChIPsim,ChromHeatMap,ChromSCape,chromstaR,chromswitch,chromVAR,西塞罗,CINdex,circRNAprofiler,cleanUpdTSeq,切肉刀,cn.mops,cn,CNVfilteR,CNVPanelizer,cnvranger.,CNVrd2,可可,彗星,compEpiTools,ComplexHeatmap,contiBAIT,conumee,copynumber,CopyNumberPlots,文案,CoverageView,CRISPRseek,CrispRVariants,csaw,dada2,DAMEfinder,dasper,debrowser,解读,DegNorm,DelayedMatrixStats,deltaCaptureC,derfinder,derfinderHelper,derfinderPlot,DEScan2,DiffBind,Diffhic.,diffloop,DMRcate,DMRScan,dmrseq,DominoEffect,dpeak,DRIMSeq,easyRNASeq,EDASeq,eisaR,埃尔默,ENmix,EnrichedHeatmap,enrichTF,Ensembldb.,EpiTxDb,epivizr,Epivizrdata.,erma,esatac.,EventPointer,exomePeak2,FastqCleaner,fastseg,fcScan,FilterFFPE,FindMyFriends,fitCons.UCSC.hg19,弗雷泽,FunciSNP,Ga4ghclient.,gcapc,GenBankr.,geneAttribution,GeneGeneInteR,创世纪,GeneStructureTools,GenoGAM,genomation,genomeIntervals,GenomicAlignments,GenomicDataCommons,GenomicFiles,GenomicInteractions,GenomicOZone,GenomicScores,GenomicState,基因组,genoset,genotypeeval,GenVisR,GGBase,ggbio,GGTools.,girafe,gmapR,gmoviz,GOfuncR,还装有,哥特,gpart软件,gQTLstats,GUIDEseq,gwascat,h5vc,HDF5Array,的热图,HiCBricks,HiCcompare,HilbertCurve,HTSeqGenie,icetea,理想的,idr2d,ima,InPAS,检查,intansv,InteractionSet,感兴趣,InterMineR,ipdDb,IsoformSwitchAnalyzeR,isomiRs,iva,IWTomics,JunctionSeq,karyoploteR,leeBamViews,萝拉,MACPET,MADSEQ,MafDb.1Kgenomes.phase1.GRCh38,MafDb.1Kgenomes.phase1.hs37d5,MafDb.1Kgenomes.phase3.GRCh38,MafDb.1Kgenomes.phase3.hs37d5,MafDb.ExAC.r1.0.GRCh38,MafDb.ExAC.r1.0.hs37d5,MafDb.ExAC.r1.0.nonTCGA.GRCh38,MafDb.ExAC.r1.0.nonTCGA.hs37d5,MafDb.gnomAD.r2.1.GRCh38,mafdb.gnomad.r2.1.hs37d5.,MafDb.gnomAD.r3.0.GRCh38,mafdb.gnomadex.r2.1.grch38.,MafDb.gnomADex.r2.1.hs37d5,MafDb.TOPMed.freeze5.hg19,MafDb.TOPMed.freeze5.hg38,MafH5.gnomAD.r3.0.GRCh38,微波激射器,MatrixRider,mCSEA,联合化疗,,MEDIPS,metagene,metagene2,metaseqR2,MethCP,methimpute,methInheritSim,MethReg,methrix.,methVisual,methyAnalysis,methylCC,methylInheritance,methylKit,methylPipe,MethylSeekR,MethylSeqData,甲基氏,弥撒,methyvim,minfi,MinimumDistance,米拉,missMethyl,MMAPPR2,Modstrings,马赛克,MOSim,motifbreakR,motifmatchr,图案,MouseFM,MSA.,msgbsR,MSnbase,MultiAssayExperiment,多atAdataset.,musicatk,MutationalPatterns,NarrowPeaks,ncrnatools.,netDx,NoRCE,normr,nucleoSim,诊断,oligoClasses,OmaDB,OMICsPCA,openPrimeR,Organism.dplyr,OrganismDbi,先驱者,packFinder,panelcn.mops,pcaExplorer,pd.081229.hg18.promoter.medip.hx1,pd.2006.07.18.hg18.refseq.promoter,pd.2006.07.18.mm8.refseq.promoter,pd.2006.10.31.rn34.refseq.promoter,pd.atdschip.tiling.,pd.charm.hg18.example,pd.feinberg.hg18.me.hx1,pd.feinberg.mm8.me.hx1,pd.mirna.3.1,pdInfoBuilder,phastCons100way.UCSC.hg19,phastCons100way.UCSC.hg38,phastCons7way.UCSC.hg38,π,图片,,plethy,podkat,聚酯,pqsfinder,婴儿车,prebs,preciseTAD,PrecisionTrialDrawer,primirTSS,高伦雅芙,profileplyr,PureCN,Pviz,QDNAseq,QFeatures,qpgraph,qPLEXanalyzer,qsea,QuasR,R3CPET,r3Cseq,R453Plus1Toolbox,RaggedExperiment,RareVariantVis,Rariant,Rcade,美国广播公司,rCGH,重新计票,REDseq,地区,regutools,REMP,Repitools,ReportingTools,rfaRm,RiboProfiling,riboSeqR,RibosomeProfiling QC,RIPAT,rnaeditr.,RNAmodR。AlkAnilineSeq,RNAmodR。毫升,RNAmodR。RiboMethSeq,RNAprobR,rnaSeqMap,RnBeads,咆哮,Rqc,Rsamtools,RSVSim,研制,rtracklayer.,衬衣,扫描。通用产品,SCANVIS,散粒,segmentSeq,SeqArray,seqCAT,seqPattern,seqplots,seqsetvis,SeqSQC,SeqVarTools,芝麻,sevenC,ShortRead,签名者,SimFFPE,,snapcount,SNPhood,SNPlocs.Hsapiens.dbSNP.20101109,SNPlocs.Hsapiens.dbSNP.20120608,SNPlocs.Hsapiens.dbSNP141.GRCh38,SNPlocs.Hsapiens.dbSNP142.GRCh37,SNPlocs.Hsapiens.dbSNP144.GRCh37,SNPlocs.Hsapiens.dbSNP144.GRCh38,SNPlocs.Hsapiens.dbSNP149.GRCh38,SNPlocs.Hsapiens.dbSNP150.GRCh38,SNPlocs.Hsapiens.dbSNP151.GRCh38,soGGi,SomaticCencealterations,SomaticSignatures,SparseSignatures,spatialLIBD,光谱,Spicyr.,SplicingGraphs,碎片,srnadiff,斯坦,strandCheckR,SummarizedExperiment,SynExtend,systemPipeR,TAPseq,目标,TarSeqQC,TCGAbiolinks,TCGAutils,TCseq,TFBSTools,TFEA。芯片,TFHAZ,TitanCNA,三硝基甲苯,tracktables,trackViewer,transcriptR,TransView,tRNA,tRNAdbImport,tRNAscanImport,TSCR.,TSRchitect,TVTB,tximeta,TxRegInfra,UMI4Cats,Uniquorn,universalmotif,VanillaICE,VariantAnnotation,VariantExperiment,VariantFiltering,vasp,wavClusteR,wiggleplotr,XCIR,xcms,XtraSNPlocs.Hsapiens.dbSNP141.GRCh38,xtrasnplocs.hsapiens.dbsnp144.grch37.,xtrasnplocs.hsapiens.dbsnp144.grch38.,XVector,山药
建议我 注释,annotationhub.,BaseSpaceR,BiocGenerics,芝加哥,ClassifyR,epivizrChart,光明,gQTLBase,gwascat,GWASTools,HilbertVis,希尔伯特维斯瓜,马提尼,海市蜃楼,多射线,regionReport,RTCGA,S4Vectors,SigsPack,飞溅,StructuralVariantAnnotation,TFutils,yeastRNASeq
链接给我 Biostrings,cn,解读,DegNorm,GenomicAlignments,GenomicRanges,烤肉串,MatrixRider,Rsamtools,rtracklayer.,ShortRead,Structstrings,三层,VariantAnnotation,VariantFiltering,XVector
构建报告

包档案

遵循bob 体育网址 在R会话中使用这个包的说明。

源包 讽刺_2.24.1.tar.gz.
Windows二进制 讽刺_2.24.1.zip.
macOS 10.13 (High Sierra) IRanges_2.24.1.tgz
源库 git克隆https://git.bioconductor.org/packages/IRanges
源存储库(开发人员访问) git克隆git@git.bioconductor.org:包/ IRanges
包短Url //www.anjoumacpherson.com/packages/IRanges/
包下载报告 下载数据
BioC 3.12的旧源包 源存档

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