版本变化1.22.0 Bug修复和较小的改进——RNASeq2Gene化验的论点时,curatedTCGAData将错误包括RNASeq2GeneNorm化验。用户想返回两种分析类型应该进入RNASeq2Gene *(星号)。1.14.0版本新特性的变化,现在的版本参数允许用户选择1.1.38或2.0.1。- 2.0.1版本包括RNASeq2Gene数据作为RSEM TPM (# 38, @mherberg)基因表达值。——基因组信息更新为RaggedExperiment类型数据对象“37”现在“GRCh37”(40 #, @vjcitn)。数据集(如机汇、GBM)包含多个化验,可以合并现在作为合并提供化验(@lwaldron # 27日)。——现在的小插图包括了如何使用TCGAprimaryTumors和getWithColData功能。Bug修复和次要改进——mRNAArray化验现在返回矩阵类型数据而不是DataFrame (@lgeistlinger # 31日,@vjcitn)。-删除力GISTIC资源——发表文章的下载现在可用的引用(“curatedTCGAData”)的变化版本1.12.0 Bug修复和次要改进——输出数据集选择如表启用dry.run时在主函数。——检查RaggedExperiment依赖加载数据时使用数据表示(@vjcitn # 39)的变化版本1.10.0 curatedTCGAData功能的新特性——控制冗长冗长的争论(@lgeistlinger # 35)——后备补充说当ExperimentHub服务离线(@vjcitn, # 36)——数据导出部分添加到主要装饰图案由于MultiAssayExperiment新特性的变化版本1.8.0 Bug修复和小改进,添加一个警告部分装饰图案的处理,TCGA数据(@vjcitn建议)——提供例子TCGAutils:: TCGAsampleSelect 1.6.0装饰图案变化版本新特性-甲基化相关的数据表示为DelayedMatrix HDF5文件内SummarizedExperiment对象。 They can be downloaded using the Methyl* assay keyword. - Big changes to documentation with table added for detailing ExperimentList data types (thanks to @lgeistlinger) - Vignette now includes some helper functions provided by TCGAutils Bug fixes and minor improvements - TCGAutils is available for use with curatedTCGAData - 'GISTIC_Peak' datasets are force downloaded due to caching mechanism issues - Issue of missing 'GISTIC' data for LAML and SKCM due to incorrect file links has been resolved (#29 @pcheng84) - Updated data documentation Changes in version 1.4.0 New features - dry.run argument in curatedTCGAData returns a list of metadata file matches Bug fixes and minor improvements - Main function now uses the MultiAssayExperiment constructor function Changes in version 1.2.0 New features - Released to Bioconductor - Supports multiple cancers with auto-merge of colData - Added full list of data types Bug fixes and minor improvements - Code clean up (helper functions) - Use metadata in main function to return list of datasets Changes in version 0.99.38 New features - Updated curatedTCGAData function - Supports multiple cancers - Includes curated colData datasets - Updated vignette, documentation from new builds - Updated metadata from pipeline Bug fixes and minor improvements - Updated NAMESPACE and DESCRIPTION - Included test for number of resources in EH and in metadata - Improved input handling of main function Changes in version 0.2.0 Bug fixes and minor improvements - Updated DESCRIPTION file to reflect authorship. - Progress towards submission to ExperimentHub Changes in version 0.1.0 - Added a NEWS file to track changes to the package.