版本2.1.1(2022-04-06)的更改 +开发了通过自动匹配/cocLustering(即,通过Coclustering自动将源散装组织/分配给单个单元格),开发了批量和单细胞数据的新功能。此功能在命令行和光泽应用程序中实现,并提供了提供的测试数据。+开发的优化函数,用于与所提供的测试数据一起使用的工作流。+通过手动匹配的共同化化在命令行中实现。版本1.99.0(2021-10-14)的更改 +实现的覆盖功能:带有SHMS的抛光模板图像,其中提供了木炭和透明选项。+实现的空间单细胞功能:通过放置单细胞嵌入图(PCA,TSNE,UMAP)和SHMS并排,在APP中定义或由用户提供的单元格群集分配,以尺寸定义单元格(PCA,TSNE,UMAP)和SHMS,在维度上,将单细胞和整体组织进行了差异。图不限于6等。 +空间富集同步到r命令行。+实现了基因ID的Sigle和多个搜索模式。版本1.1.6(2021-05-17)的变化 +空间热图能够在ASVG中定义的宽度(中风)宽度。可以使用“ update_feature”更新中风宽度。 + Text in aSVGs can be independent from features, i.e. have separate colors, stroke widths, etc. + Only "g", "path", "rect", "ellipse", "use", and "title" elements are allowed in aSVG files, and other elements will raise errors or warnings. The "use" element should not in "g", and "g" elements should not have the "transform" attribute with a "matrix" value. + Extraction of shape coordinates includes two alternative methods. If one fails, the other will be used by default. So in most cases though some coordinates are missing due to irregular shapes, spatial heatmaps can still be created. + Added spatiotemporal example of rice coleoptile to Shiny app and vignette. + Downloaded gene expression data are cached. + In "spatial_hm", the "tis.trans" argument was replaced by "ft.trans"; width and height arguments were removed, since the spatial heatmap aspect ratio is set the same with original aSVG. + Shiny app: the function "shiny_all" was renamed to "shiny_shm"; the app is able to take HDF5 database backend, which contains data and aSVG files, and the HDF5 database can also be uploaded on the user interface; re-organized user interface: Landing Page (includes links to different app instances), Spatial Heatmap (includes sub-tabs of Image, Interactive, Video, Matrix Heatmap, Interactive Network), Spatial Enrichment (identifies spatial feature-specific genes), About; new functionality introduced: auto-completion search box, URLs of specific app states can be bookmarked, full screen, scrolling height, tooltip, one-to-multiple re-matching of spatial features, fixed aspect ratio (SHMs are not squeezed in the case of multiple aSVGs), metadata column and link column in the data matrix; code was organized in modules, etc. Changes in version 0.99.0 (2020-09-21) + Submitted the first version to Bioconductor.