2.4.1版本 ------------------------ 哪一个装饰图案修改。版本测试盒框 ------------------------ o调整参数(L2_A / L1_A)添加在cellCellDecomp()(“元”、“ntd2”)。o在cellCellDecomp() (" CX ")中添加了多线性CX分解。o convertNCBIGeneID被删除。o小插图被修改了。版本2.0.0 ------------------------ o扩展到使用版本2.0.0的lrbase . xxx . exe .db-type包o省略输入enter键多次来执行示例('cellCellReport')在cellCellRanks()和cellCellDecomp()中增加了evidence选项，以选择配体-受体数据库来构建CCI-tensor (cf. evidence code: https://github.com/rikenbit/lrbase-workflow) o L-R证据被嵌入到HTML报告中。修复了. hyperlinks中与超链接相关的错误。o自动安装/加载MeSH.XXX.eg.db库。注意，该函数基于lrbase . xxx . gg .db sqlite3文件中METATDATA表中嵌入的NCBI Taxonomy ID。o将cellCellSetting的参数顺序更改为cellCellSetting(sce, lrbase, label, lr. set)。evidence="all"， color=NULL)， color参数改为可选参数。 If it is not specified, the color is automatically selected. o The way to specify the celltype label was changed in cellCellSetting. o The vignettes were modified. o The convertNCBIGeneID is deprecated. The same functionality can be available as scTGIF::convertRowID instead. VERSION 1.4.1-3 ------------------------ o A bug was fixed in .cellCellDecomp.Halpern() VERSION 1.4.0 (Bioconductor 3.11) ------------------------ o verbose parameter was added in cellCellRank() and cellCellDecomp() o set.seed(1234) was added in example and vignette o .cellCellDecomp.CabelloAguilar() and .cellCellDecomp.Halpern() were added o The num.iter 300　of NTD was changed to 30 o schex package was imported for visualing all the two dimensional gene plots o The rule of cellCellRanks() based on the singular value of SVD was changed to a reconstruction error based rule, using NMF with matricised tensor in each mode o The CCI-tensor is normalized in each frontral slice so that the total value is 1 (.frontal.normalization) VERSION 1.2.1 ------------------------ o Some bugs were fixed VERSION 1.2.0 (Bioconductor 3.10) ------------------------ o goenrich, meshenrich, reactomeenrich, doenrich, ncgenrich, and dgnenrich in cellCellReport() were added o A bug related in sparse matrix in cellCellSetting() was fixed o All the vignettes were updated o A vignette for reanalysis of the results of scTensor was added o Some bugs were fixed VERSION 1.0.13 ------------------------ o Gene-gene network based on visNetwork was introduced VERSION 1.0.11 - 1.0.12 ------------------------ o Some bugs were fixed VERSION 1.0.10 ------------------------ o The tensor decomposition model was changed from non-negative Tucker3 to non-negative Tucker2 o assayNames option was added to specify which normalized assay data user want to use o ftt option was removed (any normalization can be performed instead) VERSION 1.0.7 - 1.0.9 ------------------------ o Some bugs were fixed VERSION 1.0.6 ------------------------ o Replaced Dependency against biomaRt by AnnotationHub VERSION 1.0.3 - 1.0.5 ------------------------ o Some bugs were fixed VERSION 1.0.2 ------------------------ o Added upper in cellCellReport() o Table grid lines in {ligand,receptor}*.Rmd were added o Some bugs were fixed VERSION 1.0.1 ------------------------ o Some bugs were fixed o Three vignettes were added o convertToNCBIGeneID() to ID conversion of input matrix VERSION 1.0.0 (Bioconductor 3.9) ------------------------ o Package release VERSION 0.99.22 ------------------------ o newCCSParams(), getParam(), setParam(), and cellCellSimulate() were added o The hyperlinks to CMap (Connectivity Map) were embedded in the HTML report VERSION 0.99.21 ------------------------ o Some bugs were fixed VERSION 0.99.18 ------------------------ o Added Enrichment Analysis in cellCellReport() VERSION 0.99.15 ------------------------ o Accepted in BioC 3.9 VERSION 0.99.6 to 0.99.14 ------------------------ o Revised and modified some parts VERSION 0.99.0 ------------------------ o Package released