版本变化1.27.2搬createTCGA()包的版本变化1.27.1——固定http和https调用https://gdac.broadinstitute.org/版本变化1.23.1——合并Bioconductor git存储库GitHub git存储库版本1.7.1上的变化——RTCGA网站——http://rtcga.github的新版本。基于pkgdown io / RTCGA——改善RTCGA工作流图——https://raw.githubusercontent.com/RTCGA/RTCGA/master/RTCGA_workflow.png——createTCGA函数现在可以创建RTCGA.dataType补充道。releaseDate-like包数据。大部分的功能结果将发表在ExperimentHub Bioconductor。——检查新的数据与数据集包从2016-01-28发布日期,TCGA——https://github.com/RTCGA/RTCGA.clinical.20160128——https://github.com/RTCGA/RTCGA.mutations.20160128——https://github.com/RTCGA/RTCGA.rnaseq.20160128——https://github.com/RTCGA/RTCGA.RPPA.20160128——https://github.com/RTCGA/RTCGA.CNV.20160128——https://github.com/RTCGA/RTCGA.mRNA.20160128——https://github.com/RTCGA/RTCGA.miRNASeq.20160128——https://github.com/RTCGA/RTCGA.methylation.20160128——readTCGA现在CNV数据集的方法。——你现在可以下载包与installTCGA .20160128释放功能,默认下载它们。——改进的文档标题。——改进的手册页installTCGA添加包之后从2016-01-08。——提供了更广泛的解释? datasetsTCGA添加包之后从2016-01-08。——biocViews扩展。——缩短和改进他们的代码例子外观。——Subsitute旧url与新的手册页——RTCGA网站新架构。 Changes in version 1.3.3 - Fixed examples in expressionsTCGA that broke after changes in dplyr, while moving to tibbles. Changes in version 1.1.15 - New functions heatmapTCGA, boxplotTCGA, kmTCGA, pcaTCGA, theme_RTCGA for plotting https://rtcga.github.io/RTCGA/Visualizations.html - New functions mutationsTCGA, expressionsTCGA, survivalTCGA for data manipulations. - New website https://rtcga.github.io/RTCGA/ Changes in version 1.1 - New parameter allDataSets for downloadTCGA that allows to download all files matching string in the dataSet parameter. - New documentation page ?datasetsTCGA. - readTCGA has now new method for below files - RPPA (reverse phase protein array), - mRNA (Merge transcriptome agilent), - miRNASeq - methylation (methylation datasets) - datasetsTCGA documentation has been extended with new datasets for rppa and mrna - downloadTCGA now gives a warning when more than one file matches dataSet parameter, and downloads the first matched dataset without FFPE in the name. If all matching datasets have FFPE in the name then the first of them is downloaded. - checkTCGA now downloads also sizes with datasets names when one specifies what parameter to DatSets. - Updated tests for checkTCGA - Added new installTCGA function that can install all packages from RTCGA family. - Added new convertTCGA function that converts data.frames from RTCGA family to Bioconductor classes. - New examples in readTCGA function documentation concerning the following datasets: - methylation - RPPA - mRNA - miRNASeq - isoforms Changes in version 1.0 functions - readTCGA - infoTCGA - checkTCGA - downloadTCGA