版本1.18.1 ---------------- o改进的蛋白质推理。现在它有两个选项 - 独特的肽或剃须刀。版本1.17.1 ---------------- o扩大了免疫学工具的范围 - 发现在蛋白质序列中反映的罕见事件。版本1.15.1 -------------- o MZR现在将扫描编号添加到MZIDENDML对象的表表示中。结果，它在我的单元测试中导致错误检查文件是否正确读取。修复了使用更新的哈希检查此检查。版本1.11.1 -------------- o从McLapply切换到过滤器优化中的parlapply。这解决了一个错误“ kmp_runtime.cpp（6480）的断言失败：__kmp_thread_pool == __ null。还允许在窗口OS版本1.7.3 ------------ o逻辑错误修复PSM FDR计算中并行运行。先前它忽略了肽中的冗余到蛋白质图。 Now protein accession are discarded and unique rows considered before compuring the FDR. o Added unit test to cover new PSM FDR calculation. Version 1.7.2 ------------- o added high performance parser based on mzR::openIDFile Version 1.7.1 ------------- o added infer_parsimonious_accessions method o version leap from 1.3.1 to 1.7.1 to catch up with Bioconductor o fixed conflict between reshape2 and data.table Version 1.3.1 ------------- o S4 methods "accessions" and "proteins" outsourced to ProtGenerics Version 1.1.6 ------------- o Added explicit mc.cores argument for "Grid" type of optimization o Fix of trimming to basename on POSIX Version 1.1.5 ------------- o Always trimming spectrumFile and databaseFile to basename after reading data from mzIdentML files. Version 1.1.4 ------------- o Catching up with changes in mzID package version 1.5.3 Version 1.1.3 ------------- o Updated data, documentation and unit test to reflect the latest changes in mzID Version 1.1.2 ------------- o id_quality and evaluate_filter may have multiple values for the level argument. By default it is all three: "PSM", "peptide" and "accession". The return value for both methods is switched to matrices. o added Laurent Gatto as a contributor Version 1.1.1 ------------- o fix mishandling PSM o use mzR::psms generic Version 1.1.0 ------------- o Bumping versions after creating 3.0 release branch. Version 0.99.3 -------------- o Rcpp back into "Depends" Version 0.99.2 -------------- o Updated Rcpp dependency o Updated contact info to match the bioc-devel mailing list Version 0.99.1 -------------- o Updated dependency on mzID version Version 0.99.0 -------------- o Minor bug fixes o Added unit tests for filter optimization and assessment of non-tryptic and missed cleavages o Version bump for Bioconductor submission Version 0.1.0 -------------- o First release version