1.56版本的变化- - - - - - - - - - - - - - - - - - - - - - - -用户可见的明显变化o goSlim()不截断条款(https://github.com/Bioconductor/GSEABase/issues/5) 1.54版本的变化- - - - - - - - - - - - - - - - - - - - - - - -用户可见的明显变化o orgDb不再提供Unigene信息。删除的支持。1.39版本的变化- - - - - - - - - - - - - - - - - - - - - - - - BUG修复o goSlim()没有正确计算重复的标识符。(https://support.bioconductor.org/p/100403/) 1.35版本的变化- - - - - - - - - - - - - - - - - - - - - - - - o一些BUG修复多行警告和错误会失败而不报告错误消息。o getGmt(),去GeneSetCollection方法快得多。1.31版本的变化- - - - - - - - - - - - - - - - - - - - - - - -重要用户可见的变化啊,支持“h”广泛BUG修复o (OBOCollection“graphNEL”)未能包括多个孩子1.23版本的变化- - - - - - - - - - - - - - - - - - - - - - - -用户可见的明显变化o c7的广泛支持o警告或删除重复geneIds格林尼治时间当解析或广泛的XML 1.21版本的变化- - - - - - - - - - - - - - - - - - - - - - - - o GeneSetCollection重要用户可见变化,*,*,GOCollection-method方面evidenceCode和本体的变化在1.19版本中- - - - - - - - - - - - - - - - - - - - - - - - o UniprotIdentifier类变化在1.13版本中添加新特性- - - - - - - - - - - - - - - - - - - - - - - -阿新特性解析子类别广泛的基因集。重要用户可见啊,一个特别的标识符替换Ruuid-based变化。1.5版本的变化- - - - - - - - - - - - - - - - - - - - - - -用户可见的明显变化EntrezIdentifier o构造函数类,EnzymeIdentifier, GenenameIdentifier, RefseqIdentifier, SymbolIdentifier, UnigeneIdentifier现在可以接受一个“注释”的论点。这是用来表示注释包的标识符,例如,EntrezIdentifier (“hgu95av2.db”)表明hgu95av2 EntrezId是。db包。o GOCollection现在追踪本体以及evidenceCode。 o Add ComputedCollection class to describe gene set collections resulting from computations. o Additional GeneSetCollection constructors o Add OBOCollection class for reading OBO gene sets, including functions to retrieve OBO collections from the internet (getOBOCollectoin) and convert OBOCollections to and from graphNEL objects. o GeneSets constructed from GOCollections require a geneIdType with an appropriate (i.e., GO to identifier) mapping, e.g., geneIdType=EntrezIdentifier("org.Hs.eg.db") NEW FEATURES o geneIdType<- and mapIdentifiers can now map between any two identifier types within an annotation package, e.g., SymbolIdentifer('org.Hs.eg.db') to GenenameIdentifier('org.Hs.eg.db') o Parse revised Broad gene sets. o More extensive information in some 'show' methods o Added a mapIdentifiers method to allow maps with user-supplied AnnDbBimap objects BUG FIXES o GO evidenceCodes updated to current codes available as defined in GO o GeneSetCollection,ExpressionSet,(Pfam|Prosite|Chrloc)Collection-method now correctly navigate the underlying annotations and create gene set collections o A GeneSetCollection constructed with a named list could incorrectly propagate the set names. o Export MapCollection class o Mapping AnnotationIdentifer to AnnotationIdentifier failed due to incorrect method selection (start date: 9 February, 2008)