1.12.0版本的变化- - - - - - - - - - - - - - - - - - - - - - - - o添加新特性函数orgKEGGIds2EntrezIDs获取KEGG id和Entrez IDs之间的映射添加函数makeAxtTracks o添加函数addAncestorGO 1.10.0版本的变化- - - - - - - - - - - - - - - - - - - - - - - -阿新功能更新CNE类来存储管道运行的所有信息。o添加read.rmMask。农庄阅读RepeatMasker .out文件。o添加阅读。rmskFasta阅读软重复蒙面fasta文件。o添加的分布阴谋axt对齐匹配。o添加CNE长度的分布。o为axt添加syntenicDotplot对齐和GRangePairs。o readAxt readBed, seqinfo保存时可用。o新fixCoordinates函数使Axt的坐标对齐总是相对于积极的链。 o Add parallel subAxt for Axt alignment. o Add the plot of genomic distribution of CNE. o Add the function to make bed and bigwig files of CNEs. BUG FIXES o Instead of an error, an empty GRangePairs is returned when no CNEs identified. CHANGES IN VERSION 1.8.0 ------------------------ BUG FIXES o Fix a bug caused by "format" in the blat step. NEW FEATURES o Add the pairwise whole genome alignment pipeline o Add a new class "GRangePairs" o "Axt" class is now based on "GRangePairs" class. o readAncora for reading Ancora format CNE files.