版本变化2.18.2 o解决问题当下载所有数据从一个物种的变化版本2.18.1 o可能性来检索单个细胞完整RNA-Seq从Bgee 15.0 o的可能性后,过滤数据基于性和应变Bgee 15.0和o可能性过滤后cellTypeId为单细胞全长RNA-Seq Bgee 15.0和o pValue添加下载文件修改后版本2.14.1 o解决下载超时与Windows版本的变化2.14.0 o下载数据存储在本地SQLite数据库中o过滤选项添加到getData()函数实现函数来删除本地SQLite数据库o版本更新装饰图案和README变化2.13.1 o getData()函数解决问题当尝试解压巨大的焦油。gz文件(如人类所有的实验数据或GTeX) version 2.6.2 o formatData修复问题的变化()函数。现在可以使用Bgee时格式使用fpkm表达式值14.0。o实施回归测试o更新装饰图案和README变化2.6.1 o Bgee 14.0焦油修复问题。广州注释文件管理。o更新自述和描述文件。2.6.0 o兼容新版本焦油的变化。gz压缩下载文件。o潜在问题的更好的管理本体论结构。更好的管理阿.RData对象数据集用于创建装饰图案。o固定与物种的名字组成的小问题超过2名(e。g犬属狼疮后裔)。2.3.2版本的兼容性的变化与新Bgee TopAnat包的一部分发布14 (www.bgee.org/bgee14/)。o潜在问题的更好的管理本体论结构。 Changes in version 2.3.1 o Compatibility with the new Bgee release 14 (www.bgee.org/bgee14/) only for the processed data download part. o The TopAnat part still temporarily uses data from Bgee release 13.2, until the webservice is ready. o Retro compatibility with Bgee release 13.2 (www.bgee.org/bgee13/). Changes in version 2.2.0 o Instead of returning a topGO-compatible object, topAnat.R now returns an object from the topAnatData class, an extension of topGOdata class from the topGO package. o Fixed small issue with management of data types given as input by the user (dataType argument when creating new Bgee class) o Fixed bug in experiment Id check step. Now accomodates SRA Ids. o Fixed data frames header names that included double dots. o Removed dependency to biomaRt in vignette. Code is still detailed but not run, instead a pre-created gene list object is loaded from the data/ directory. Changes in version 2.0.0 (2016-10-10) o Implemented possibility to deal with different Bgee releases. o Improved storage and versioning of cached files. o Implemented use of API key to query our servers in order to prevent overloading and spamming. o Improved management of downloading errors. o Harmonized the use of a Bgee class object by all functions of the package. For example, loadTopAnatData() now requires an input Bgee class object to specify species, dataType and pathToData arguments. o Added input Bgee class object to output of loadtopAnatData() function. o Created new getAnnotation(), getData() and formatData() independent functions to replace the Bgee class methods get_annotation(), get_data() and format_data(). o In formatData() function, when affymetrix data is used, the "stats" parameter is automatically set to "intensities". o Added possibility to reproduce an analysis offline if all data files were previously downloaded in cache. o Fixed data frames headers including spaces to more convenient headers with spaces replaced by dots. o Harmonized use of camelCase in functions arguments. o Added argument allowing to sort result table in makeTable() function. o Implemented management of TPMs as expression unit in future Bgee releases. o Updated vignette. Changes in version 1.0.3 (2016-08-31) o Update of format_data() function to output an Expression Set object. o Fixed makeTable "FDR" column which was a factor instead of a numeric. o Fixed get_data() and format_data() functions, which did not work when multiple chip types were available for an experiment. Changes in version 1.0.0 (2016-05-03) o Public release of BgeeDB Bioconductor package. Enjoy!