版本1.13.1变化- - - - - - - - - - - - - - - - - - - - - - - - - BUG修复改变访问令牌和项目ID用于装饰图案,以反映变化BaseSpace变化在1.7版本中执行的强制许可。x - - - - - - - - - - - - - - - - - - - - - - - - -阿新功能改进API的设计和一个清洁工表示BaseSpace数据模型。阿新数 方法。应该使用这些方法的实例数量的一个特定的资源,在当前可见的范围。例如,样品在一个项目的总数。或给定AppResults文件的总数。o提高身份验证过程。现在可以无缝地使用R SDK从本机应用程序或Web应用程序。新的“AppSessionAuth”在这种情况下类来处理身份验证。它扩展了“AppAuth”类,通过跟踪AppSession Id。用户级构造函数:“authWebClient()”和“authNativeClient()的发电机.AppSessionAuth ()。阿新处理BaseSpace服务器响应的机制。“ResponseStatus”类现在用于跟踪HTTP /服务器响应状态和集成在“AppAuth”界面。 'x$showResponse()' can now be used to print the (JSON) body of the last response from the server. o Integration with some Bioconductor data structures. BAM data from BaseSpace can now be easily map to 'BamFile' objects. SIGNIFICANT USER-VISIBLE CHANGES o 'authenticateClient()' function remove and replaced by 'authWebClient()' and 'authNativeClient()'. 'AppAuth' instances are used for desktop Apps only. BUG FIXES o Minor bug fixes with the authentication process. o Method dispatchment now works as intended for 'listFiles' and 'Files'. CHANGES IN VERSION 1.1.x ------------------------- NEW FEATURES o New high level function performOAuth() makes the App authentication easier. o initializeAuth() now fires up a browser window and starts the OAuth v2 process. Users can use 'useBrowser' parameter to control this behaviour. SIGNIFICANT USER-VISIBLE CHANGES o requestAccessToken() now returns an integer giving the status of request: * 1 if the request was succesful and an access_token was received * -1 if the AppAuth handle already contains a feasible access token * An integer larger than one if the request fails. There is also a new 'verbose' parameter controling the messages shown to the user. By default 'verbose = TRUE' BUG FIXES o Added end of line character to some messages. o fileItem$Size is now stored as a numeric, thus allowing for file larger than 2GB. VERSION 1.0.0 ------------------------- PACKAGE FEATURES o BaseSpaceR is a R SDK for Illumina's BaseSpace cloud computing environment, enabling the rapid prototyping and development of production ready application for next-gen sequencing data. o It provides a set of S4 classes and methods to interface with BaseSpace data model. o It allows for persistent connections with BaseSpace REST server and offers support for the REST API query parameters. o It allows for queries across multiple Projects, Samples, Files, AppResults, etc., using vectorized operations in line with the R semantic.