swfdr

DOI:10.18129/B9.bioc.swfdr

This is thedevelopmentversion of swfdr; for the stable release version, seeswfdr.

Estimation of the science-wise false discovery rate and the false discovery rate conditional on covariates

Bioconductor version: Development (3.17)

This package allows users to estimate the science-wise false discovery rate from Jager and Leek, "Empirical estimates suggest most published medical research is true," 2013, Biostatistics, using an EM approach due to the presence of rounding and censoring. It also allows users to estimate the false discovery rate conditional on covariates, using a regression framework, as per Boca and Leek, "A direct approach to estimating false discovery rates conditional on covariates," 2018, PeerJ.

Author: Jeffrey T. Leek, Leah Jager, Simina M. Boca, Tomasz Konopka

Maintainer: Simina M. Boca , Jeffrey T. Leek

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") # The following initializes usage of Bioc devel BiocManager::install(version='devel') BiocManager::install("swfdr")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	MultipleComparison,Software,StatisticalMethod
Version	1.25.0
In Bioconductor since	BioC 3.5 (R-3.4) (5.5 years)
License	GPL (>= 3)
Depends	R (>= 3.4)
Imports	methods, splines, stats4, stats
LinkingTo
Suggests	dplyr,ggplot2,BiocStyle,knitr,qvalue,reshape2,rmarkdown,testthat
SystemRequirements
Enhances
URL	https://github.com/leekgroup/swfdr
BugReports	https://github.com/leekgroup/swfdr/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Followbob 体育网址 指示在R会话中使用这个包.

Source Package
Windows Binary	swfdr_1.25.0.zip
macOS Binary (x86_64)	swfdr_1.25.0.tgz
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/swfdr
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/swfdr
Bioc Package Browser	https://code.bioconductor.org/browse/swfdr/
Package Short Url	//www.anjoumacpherson.com/packages/swfdr/
Package Downloads Report	Download Stats