ArrayExpressHTS

DOI:10.18129/B9.bioc.ArrayExpressHTS

This package isdeprecated. It will probably be removed from Bioconductor. Please refer to thepackage end-of-life guidelinesfor more information.

This is thedevelopmentversion of ArrayExpressHTS; for the stable release version, seeArrayExpressHTS.

ArrayExpress High Throughput Sequencing Processing Pipeline

Bioconductor version: Development (3.17)

RNA-Seq processing pipeline for public ArrayExpress experiments or local datasets

Author: Angela Goncalves, Andrew Tikhonov

Maintainer: Angela Goncalves , Andrew Tikhonov

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") # The following initializes usage of Bioc devel BiocManager::install(version='devel') BiocManager::install("ArrayExpressHTS")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	ImmunoOncology,RNASeq,Sequencing,Software
Version	1.49.1
In Bioconductor since	BioC 2.8 (R-2.13) (12 years)
License	Artistic License 2.0
Depends	sampling,Rsamtools(>= 1.99.0),snow
Imports	Biobase,BiocGenerics,Biostrings,GenomicRanges,Hmisc,IRanges(>= 2.13.11),R2HTML,RColorBrewer,Rsamtools,ShortRead,XML,biomaRt,edgeR, grDevices, graphics, methods,rJava, stats,svMisc, utils,sendmailR,bitops
LinkingTo	Rhtslib(>= 1.15.3)
Suggests
SystemRequirements	GNU make
Enhances
URL
Depends On Me
Imports Me
Suggests Me
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Build Report

Package Archives

Followbob 体育网址 指示在R会话中使用这个包.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/ArrayExpressHTS
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ArrayExpressHTS
Package Short Url	//www.anjoumacpherson.com/packages/ArrayExpressHTS/
Package Downloads Report	Download Stats