版本变化1.34.0 o新功能:simReads()和scanFasta ()。simReads()生成仿真RNA-seq读取记录。o对齐()和subjunc()估计片段长度映射读对,使用估计的长度来协助报告最好的对齐。o对齐()和subjunc()喜欢比对没有indels包括在indel-containing比对相同数量的匹配的基地。o对齐()和subjunc()检查是否索引文件被成功加载开始前阅读映射。o对齐()和subjunc()检测indels因不正确的转移时种子序列映射到低地区并从阅读变更及排除这种indels indel报告。o buildindex(),()和subjunc对齐()支持gzip FASTA格式。o featureCounts()允许映射读取‘*’作为染色体的名字。o removeDupReads()支持BAM-format输入和输出。的变化版本1.32.0 o新flattenGTF()函数为一个区间,合并重叠的特性。 o New parameter for align() and subjunc(): sortReadsByCoordinates. o New parameters for featureCounts(): readShiftType, readShiftSize and additionalAttributes. o Specify strand protocol for each library individually in featureCounts(). o Much improved speed of align() and subjunc(). o align() and subjunc() return mapping statistics. o Default setting of buildindex() is changed to building a one-block full index.