bnbc

DOI:10.18129/B9.bioc.bnbc

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, seebnbc.

Bandwise normalization and batch correction of Hi-C data

Bioconductor version: 3.9

Tools to normalize (several) Hi-C data from replicates.

Author: Kipper Fletez-Brant [cre, aut], Kasper Daniel Hansen [aut]

Maintainer: Kipper Fletez-Brant

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("bnbc")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation

查看文档的版本包age installed in your system, start R and enter:

browseVignettes("bnbc")

HTML	R Script	bnbc User's Guide
PDF		Reference Manual
Text		NEWS

Details

biocViews	HiC,Normalization,Preprocessing,Software
Version	1.6.0
In Bioconductor since	BioC 3.6 (R-3.4) (2 years)
License	Artistic-2.0
Depends	R (>= 3.4.0), methods,BiocGenerics,SummarizedExperiment,GenomicRanges
Imports	Rcpp(>= 0.12.12),IRanges,GenomeInfoDb,S4Vectors,matrixStats,preprocessCore,sva, parallel,EBImage, utils
LinkingTo	Rcpp
Suggests	BiocStyle,knitr,rmarkdown,RUnit
SystemRequirements
Enhances
URL	https://github.com/hansenlab/bnbc
BugReports	https://github.com/hansenlab/bnbc/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Followbob 体育网址 instructions to use this package in your R session.

Source Package	bnbc_1.6.0.tar.gz
Windows Binary	bnbc_1.6.0.zip
Mac OS X 10.11 (El Capitan)	bnbc_1.6.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/bnbc
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/bnbc
Package Short Url	//www.anjoumacpherson.com/packages/bnbc/
Package Downloads Report	Download Stats