SummarizedExperiment

DOI:10.18129 / B9.bioc.SummarizedExperiment

这个包是3.9版本Bioconductor;的稳定,最新的发布版本,请参阅SummarizedExperiment

SummarizedExperiment容器

Bioconductor版本:3.9

SummarizedExperiment容器包含一个或多个化验,每个代表一个矩阵像对象的数字或其他模式。行通常代表基因组范围的利益和列代表样本。

作者:马丁·摩根,吉姆·海丝特瓦莱丽•Obenchain Herve页面

维修工:Bioconductor包维护者<维护者bioconductor.org >

从内部引用(R,回车引用(“SummarizedExperiment”)):

安装

安装这个包,开始R(版本“3.6”)并输入:

如果(!requireNamespace (“BiocManager”,悄悄地= TRUE)) install.packages (“BiocManager”) BiocManager::安装(“SummarizedExperiment”)

R的旧版本,请参考适当的Bioconductor释放

文档

查看文档的版本这个包安装在您的系统,开始R和输入:

browseVignettes (“SummarizedExperiment”)

HTML R脚本 1。SummarizedExperiment协调实验分析、样品和感兴趣的区域
HTML R脚本 2。扩展SummarizedExperiment类
PDF 参考手册
文本 新闻

细节

biocViews 注释,报道,遗传学,GenomeAnnotation,基础设施,测序,软件
版本 1.14.1
Bioconductor自 BioC 3.2 (r - 3.2)(4年)
许可证 艺术- 2.0
取决于 R(> = 3.2),方法,GenomicRanges(> = 1.33.6),Biobase,DelayedArray(> = 0.3.20)
进口 跑龙套、统计数据、工具,矩阵,BiocGenerics(> = 0.15.3),S4Vectors(> = 0.17.25),IRanges(> = 2.13.16),GenomeInfoDb(> = 1.13.1)
链接
建议 注释,AnnotationDbi,hgu95av2.db,GenomicFeatures,TxDb.Hsapiens.UCSC.hg19.knownGene,BiocStyle,knitr,rmarkdown,消化,jsonlite,rhdf5,HDF5Array(> = 1.7.5),气道,RUnit,testthat
SystemRequirements
增强了
URL
取决于我 AffiXcan,气道,AllelicImbalance,BDMMAcorrect,BiocSklearn,BiSeq,bnbc,bodymapRat,bsseq,CAGEfightR,celaref,clusterExperiment,coseq,csaw,curatedAdipoChIP,curatedAdipoRNA,DaMiRseq,德科,deepSNV,DeMixT,DESeq2,DEXSeq,DiffBind,diffcoexp,diffHic,散度,DMCHMM,DREAM4,dsQTL,ENmix,EnrichmentBrowser,epigenomix,evaluomeR,EventPointer,ExpressionAtlas,裂变,FlowSorted.Blood.EPIC,FlowSorted.CordBloodCombined.450k,GenoGAM,GenomicAlignments,GenomicFiles,genoset,geuvPack,GRmetrics,GSEABenchmarkeR,HDCytoData,HelloRanges,hipathia,HMP16SData,InTAD,InteractionSet,感兴趣,iSEE,isomiRs,ivygapSE,JunctionSeq,lipidr,LoomExperiment,工商管理硕士,MetaGxBreast,MetaGxOvarian,methylPipe,microRNAome,minfi,miRmine,mpra,MultiAssayExperiment,NADfinder,NBAMSeq,先驱者,parathyroidSE,PowerExplorer,profileplyr,重新计票,REMP,restfulSE,restfulSEData,RIPSeeker,rqt,runibic,sampleClassifierData,Scale4C,司康饼,scRNAseq,SDAMS,SGSeq,simulatorZ,SingleCellExperiment,singleCellTK,soGGi,sRACIPE,经验丰富的人,SummarizedBenchmark,survtype,TimeSeriesExperiment,TissueEnrich,TNBC.CMS,VanillaICE,VariantAnnotation,山药,zinbwave
进口我 亚当,适应,ALDEx2,高山,anamiR,微生物,anota2seq,apeglm,appreci8R,亚瑟士,AUCell,基础知识,后面;,bayNorm,BBCAnalyzer,BiocOncoTK,biotmle,biovizBase,BiSeq,BloodCancerMultiOmics2017,brgedata,BUMHMM,BUScorrect,篮球选手,CAMTHC,催化剂,ccfindR,celda,CellMixS,CellTrails,负责,印度豹,ChIPpeakAnno,chromVAR,CLLmethylation,CNPBayes,CNVRanger,coexnet,CoGAPS,compartmap,consensusDE,CopyNumberPlots,COSMIC.67,countsimQC,curatedTCGAData,cydar,DChIPRep,debrowser,DEComplexDisease,decompTumor2Sig,反编排,DEGreport,,DEScan2,命运,diffcyt,DiscoRhythm,DominoEffect,doppelgangR,定量给料器,easyRNASeq,埃尔默,ensemblVEP,epivizrData,erma,FCBF,鱼池,FourCSeq,空对空导弹,GenomicDataCommons,GGBase,ggbio,glmSparseNet,GNET2,gQTLBase,gQTLstats,GreyListChIP,gwasurvivr,HTSeqGenie,HumanTranscriptomeCompendium,iasva,icetea,理想的,IHWpaper,ImpulseDE2,infercnv,检查,InterMineR,iteremoval,LineagePulse,M3D,MADSEQ,桅杆,mbkmeans,mCSEA,,MetaGxPancreas,MetaNeighbor,methyAnalysis,MethylAid,methylumi,methyvim,MinimumDistance,miRLAB,miRSM,MLSeq,MoonlightR,motifbreakR,motifmatchr,MPRAnalyze,msgbsR,MTseeker,MultiDataSet,multiOmicsViz,MutationalPatterns,MWASTools,netSmooth,NormalyzerDE,oligoClasses,omicRexposome,OmicsLonDA,omicsPrint,oncomix,OVESEG,PAIRADISE,pcaExplorer,phemd,phenopath,psichomics,PureCN,qsmooth,R453Plus1Toolbox,RaggedExperiment,RareVariantVis,RcisTarget,readat,regionReport,regsplice,rgsepd,Rmmquant,咆哮,rScudo,RTCGAToolbox,研制,SC3,,scDD,scds,scfind,scmap,scMerge,scmeth,SCnorm,scoreInvHap,scPipe,食物,颈背,scTensor,seqCAT,sigFeature,singscore,SingscoreAMLMutations,激流回旋,弹弓,紧身的,SNPchip,SNPhood,SpatialCPie,飞溅,srnadiff,SVAPLSseq,switchde,systemPipeR,TCGAbiolinks,TCGAbiolinksGUI,TCGAutils,TCGAWorkflow,TCGAWorkflowData,TCseq,tenXplore,ToPASeq,TreeSummarizedExperiment,时尚的,TSRchitect,TTMap,TVTB,tximeta,TxRegInfra,VariantFiltering,vidger,yriMulti,zFPKM
建议我 AnnotationHub,biobroom,biotmleData,CAGEWorkflow,dcanr,DelayedArray,DuoClustering2018,epivizr,epivizrChart,esetVis,GENIE3,GenomicRanges,Glimma,globalSeq,gsean,HDF5Array,interactiveDisplay,methyvimData,MSnbase,pathprint,pathprintGEOData,pathwayPCA,podkat,RforProteomics,RiboProfiling,S4Vectors,scFeatureFilter,semisup,芝麻,StructuralVariantAnnotation,TFutils,tissueTreg
我的链接
构建报告

包档案

遵循bob 体育网址 指示在R会话中使用这个包。

源包 SummarizedExperiment_1.14.1.tar.gz
Windows二进制 SummarizedExperiment_1.14.1.zip
Mac OS X 10.11(埃尔卡皮坦) SummarizedExperiment_1.14.1.tgz
源库 git克隆https://git.bioconductor.org/packages/SummarizedExperiment
源库(开发人员访问) git克隆git@git.bioconductor.org:包/ SummarizedExperiment
包短Url //www.anjoumacpherson.com/packages/SummarizedExperiment/
包下载报告 下载数据

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