GenomeInfodB

doi:10.18129/b9.bioc.genomeinfodb

该包适用于生物导体的3.9版;对于稳定的最新版本,请参阅GenomeInfodB

操纵染色体名称的实用程序,包括修改它们以遵循特定的命名样式

生物导体版本:3.9

包含定义并允许在不同染色体序列命名约定(例如“ Chr1” Vers“ 1”)之间进行翻译的数据和函数,其中包括试图将序列名称放置在其自然而不是词典学顺序中的函数。

作者:Sonali Arora,Martin Morgan,Marc Carlson,H。Pagès

维护者:bioconductor.org>的生物导体套件维护器<维护器>

引用(从r内,输入引用(“ GenomeInfodB”)):

安装

要安装此软件包,请启动R(版本“ 3.6”)并输入:

if(!sireseenamespace(“ biocmanager”,悄悄= true))install.packages(“ biocmanager”)biocmanager :: install(“ genomeInfodb”)

对于R的较旧版本,请参考适当的生物导体释放

文档

要查看系统中安装此软件包的版本的文档,请启动R并输入:

Browsevignettes(“ GenomeInfodB”)

PDF R脚本 GenomeInfodB:GenomeInfodB简介
PDF R脚本 GenomeInfodB:将您的生物提交给GenomeInfodB
PDF 参考手册
文本 消息
视频 简单的任务基因组知行

细节

生物浏览 注解,,,,datarepresentation,,,,遗传学,,,,基因数,,,,软件
版本 1.20.0
在生物导体中 Bioc 2.14(R-3.1)(5。5年)
执照 艺术2.0
要看 r(> = 3.1),方法,生物基因(> = 0.13.8),S4VECTORS(> = 0.17.25),iranges(> = 2.13.12)
进口 Stats,Stats4,Utils,rcurl,,,,GenomeInfodBdata
链接
建议 基因组机,,,,rsamtools,,,,基因组签名,,,,BSGENOME,,,,GenomicFeatures,,,,BSGENOME.SCEREVISIAE.UCSC.SACCER2,,,,bsgenome.celegans.ucsc.ce2,,,,bsgenome.hsapiens.ncbi.grch38,,,,txdb.dmelanogaster.ucsc.dm3.ensgene,,,,运行,,,,生物使用,,,,尼特
系统要求
增强
URL
取决于我 BSGENOME,,,,Bumphunter,,,,芯片,,,,法典,,,,CSAR,,,,eqtl,,,,基因组签名,,,,GenomicFeatures,,,,基因组机,,,,基因组菌,,,,GMAPR,,,,grohmm,,,,Helloranges,,,,htseqtools,,,,IDEOVIZ,,,,甲基分析,,,,mtseeker,,,,rsamtools,,,,snplocs.hsapiens.dbsnp141.grch38,,,,snplocs.hsapiens.dbsnp142.grch37,,,,变体,,,,xtrasnplocs.hsapiens.dbsnp141.grch38
进口我 等位基因平衡,,,,高山,,,,扩增器,,,,Aneufinder,,,,AnnotationHubdata,,,,Annotatr,,,,atacseqqc,,,,Baalchip,,,,舞会礼服,,,,BasicStarrseq,,,,Biovizbase,,,,Biseq,,,,BNBC,,,,分支机构,,,,Breakpointr,,,,BSGENOME,,,,BSSEQ,,,,Cagefightr,,,,卡格,,,,卡斯珀,,,,cexor,,,,Chimeraviz,,,,chipanalyser,,,,Chipenrich,,,,chipenrich.data,,,,chipexoqual,,,,Chippeakanno,,,,Chipseeker,,,,Chromstar,,,,Chromvar,,,,Cindex,,,,清理,,,,CN. -ops,,,,CNER,,,,cnpbayes,,,,cnvpanelizer,,,,cnvranger,,,,Compepitools,,,,共识,,,,Conumee,,,,库务,,,,copywriter,,,,crisprvariants,,,,CSAW,,,,CustomProdb,,,,深布鲁尔,,,,德芬德,,,,derfinderplot,,,,DESCAN2,,,,Diffhic,,,,diffloop,,,,DMRSCAN,,,,DMRSEQ,,,,多米诺骨牌效应,,,,EasyRnaseq,,,,埃尔默,,,,富集,,,,Ensembldb,,,,ememblvep,,,,Epgenomix,,,,epivizrdata,,,,EPIVIZRSTANTALLONE,,,,Erma,,,,esatac,,,,EventPointer,,,,外观复制,,,,FitCons.UCSC.HG19,,,,Funchip,,,,Funtoonorm,,,,ga4ghclient,,,,ga4ghshiny,,,,GCAPC,,,,GenBankr,,,,基因贡献,,,,Genogam,,,,基因组化,,,,基因组合,,,,Genomicfiles,,,,基因组间,,,,GenomicsCores,,,,Genoset,,,,Genotypeeval,,,,Genvisr,,,,GGBIO,,,,ggtools,,,,gqtlstats,,,,grasp2db,,,,Greylistchip,,,,Guideseq,,,,GVIZ,,,,Gwascat,,,,H5VC,,,,热图,,,,打ic,,,,HITC,,,,htseqgenie,,,,IMAS,,,,inpas,,,,互动集,,,,同工型间分析仪,,,,IVAS,,,,核粒子,,,,ldblock,,,,Macpet,,,,Madseq,,,,mafdb.1kgenomes.phase1.grch38,,,,mafdb.1kgenomes.phase1.hs37d5,,,,mafdb.1kgenomes.phase3.grch38,,,,mafdb.1kgenomes.phase3.hs37d5,,,,mafdb.esp6500si.v2.ssa137.grch38,,,,mafdb.esp6500si.v2.ssa137.hs37d5,,,,mafdb.exac.r1.0.grch38,,,,mafdb.exac.r1.0.hs37d5,,,,mafdb.exac.r1.0.nontcga.grch38,,,,mafdb.exac.r1.0.nontcga.hs37d5,,,,mafdb.gnomad.r2.0.1.grch38,,,,mafdb.gnomad.r2.1.grch38,,,,mafdb.gnomad.r2.1.hs37d5,,,,mafdb.gnomadex.r2.0.1.grch38,,,,mafdb.gnomadex.r2.1.grch38,,,,mafdb.gnomadex.r2.1.hs37d5,,,,mafdb.topmed.freeze5.hg19,,,,mafdb.topmed.freeze5.hg38,,,,马瑟,,,,metagene,,,,metagene2,,,,metavizr,,,,甲基,,,,甲基赫里西氏菌,,,,甲基库,,,,甲基管,,,,甲基菌,,,,methyvim,,,,Minfi,,,,最小值,,,,马赛克,,,,Motifbreakr,,,,MotifMatchr,,,,MSGBSR,,,,mtseekerdata,,,,多希克科姆,,,,突变模式,,,,myvariant,,,,NADFINDER,,,,狭窄,,,,NORMR,,,,,,,,OMICSPCA,,,,ORFIK,,,,有机体,,,,panelcn.mops,,,,phastcons100way.ucsc.hg19,,,,phastcons100way.ucsc.hg38,,,,phastcons7way.ucsc.hg38,,,,pi,,,,管框,,,,plyranges,,,,podkat,,,,婴儿车,,,,Prebs,,,,profileplyr,,,,蛋白质组学杂志,,,,属属,,,,qpgraph,,,,QSEA,,,,,,,,R3CPET,,,,R3CSEQ,,,,破烂的经历,,,,Rarevariantvis,,,,稀有,,,,rcade,,,,RCAS,,,,RCGH,,,,叙事,,,,区域人,,,,地区报告,,,,REMP,,,,repitools,,,,肋骨蛋白,,,,riboseqr,,,,RJMCMCN核小体,,,,怒吼,,,,rtcgatoolbox,,,,rtracklayer,,,,Scmeth,,,,颈背,,,,片段,,,,Seqarray,,,,seqcat,,,,seqplots,,,,seqsetvis,,,,塞文,,,,sgseq,,,,Shortread,,,,Snpchip,,,,Snphood,,,,snplocs.hsapiens.dbsnp141.grch38,,,,snplocs.hsapiens.dbsnp142.grch37,,,,snplocs.hsapiens.dbsnp144.grch37,,,,snplocs.hsapiens.dbsnp144.grch38,,,,snplocs.hsapiens.dbsnp149.grch38,,,,snplocs.hsapiens.dbsnp150.grch38,,,,snplocs.hsapiens.dbsnp151.grch38,,,,soggi,,,,躯体签名,,,,稀疏,,,,剪接图,,,,碎片,,,,Srnadiff,,,,斯坦,,,,Strandcheckr,,,,总结性特征,,,,tarseqqc,,,,tcgabiolinks,,,,tcgautils,,,,tcgaworkflow,,,,TFBSTOOLS,,,,Titancna,,,,TNT,,,,TrackViewer,,,,transcriptr,,,,Trnascanimport,,,,tsrchitect,,,,TVTB,,,,tximeta,,,,txreginfra,,,,Ularcirc,,,,香草,,,,变体滤波器,,,,变体工具,,,,WigglePlotr,,,,xtrasnplocs.hsapiens.dbsnp141.grch38,,,,xtrasnplocs.hsapiens.dbsnp144.grch37,,,,xtrasnplocs.hsapiens.dbsnp144.grch38,,,,yapsa,,,,yrimulti
建议我 注释,,,,AnnotationHub,,,,Bioconcotk,,,,Chromswitch,,,,实验室,,,,GQTLBASE,,,,parglms,,,,QDNASEQ,,,,补偿,,,,结构视频隔离,,,,tfutils
链接到我
构建报告

包装档案

跟随bob 体育网址 在R会话中使用此软件包的说明。

源包 GenomeInfodB_1.20.0.tar.gz
Windows二进制 GenomeInfodB_1.20.0.zip(32-和64位)
Mac OS X 10.11(El Capitan) GenomeInfodB_1.20.0.tgz
源存储库 git克隆https://git.bioconductor.org/packages/genomeinfodb
源存储库(开发人员访问) git clone git@git.bioconductor.org:packages/genomeInfodB
包装短URL //www.anjoumacpherson.com/packages/genomeinfodb/
软件包下载报告 下载统计

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