TxDb.Hsapiens.UCSC.hg19.knownGene

DOI:10.18129/B9.bioc.TxDb.Hsapiens.UCSC.hg19.knownGene

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, seeTxDb.Hsapiens.UCSC.hg19.knownGene.

Annotation package for TxDb object(s)

Bioconductor version: 3.8

Exposes an annotation databases generated from UCSC by exposing these as TxDb objects

Author: Marc Carlson, Bioconductor Package Maintainer [cre]

Maintainer: Bioconductor Package Maintainer

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("TxDb.Hsapiens.UCSC.hg19.knownGene")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	AnnotationData,Genetics,Homo_sapiens,TxDb
Version	3.2.2
License	Artistic-2.0
Depends	GenomicFeatures(>= 1.21.30)
Imports	AnnotationDbi
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me	annotation,chimera,FDb.InfiniumMethylation.hg19,FunciSNP,Homo.sapiens,TFEA.ChIP,variants,vulcan
Imports Me	appreci8R,ChIPQC,ChIPseeker,RareVariantVis,rCGH
Suggests Me	AllelicImbalance,AnnotationDbi,annotatr,ATACseqQC,beadarray,BiocOncoTK,BiocParallel,biomvRCNS,biovizBase,BSgenome.Hsapiens.UCSC.hg19,bumphunter,cgdv17,chipenrich.data,ChIPpeakAnno,chromPlot,cpvSNP,CRISPRseek,derfinder,derfinderPlot,esATAC,GA4GHclient,GA4GHshiny,gage,geneAttribution,GENESIS,GenomicAlignments,GenomicFeatures,GenomicRanges,GenomicScores,GenVisR,ggbio,gmapR,GoogleGenomics,gQTLstats,groHMM,GUIDEseq,HTSeqGenie,InPAS,karyoploteR,MAST,methyAnalysis,MutationalPatterns,OUTRIDER,PureCN,R3CPET,regionReport,RiboProfiling,rtracklayer,SGSeq,SigFuge,SplicingGraphs,SummarizedExperiment,TCGAutils,trackViewer,transcriptR,tximport,VariantAnnotation,VariantFiltering
Links To Me

Package Archives

Followbob 体育网址 指示在R会话中使用这个包.

Source Package	TxDb.Hsapiens.UCSC.hg19.knownGene_3.2.2.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Package Short Url	//www.anjoumacpherson.com/packages/TxDb.Hsapiens.UCSC.hg19.knownGene/
Package Downloads Report	Download Stats