版本变化1.14.0 - - - - - - - - - - - - - - - - - - -新特性添加函数解析MEME输出。阿加searchSeq并行计算。1.12.0版本的变化- - - - - - - - - - - - - - - - - - - BUG修复o PFMSimilarity修复一个缺陷。o修复一个错误为主题matrx当有多个类。新特性o readJASPARMatrix函数添加JASPAR格式文件。版本变化1.10.0 - - - - - - - - - - - - - - - - - - - BUG修复meme 4.10 o runMEME适应工作。x版本。o修复run_MEME o更好的错误处理的科学记数法MEME wrappe 1.9.4版本的变化- - - - - - - - - - - - - - - - - - - - - - - - o转换从IUPAC字符串添加到新特性矩阵o toPWM toICM工作PFMatrixList BUG修复o修复seqLogo错误当每个基本相同的频率在某些网站。多亏了利兹。o修复数据库接口处理重复JASPAR2016中的某些TFBS /丢失的记录。在某些情况下o修复强势形式方法失败。 CHANGES IN VERSION 1.7.2 ------------------------ NEW FEATURES o New class TFFMFirst and TFFMDetail for next generation TFBSs. o Novel TFFM sequence logo. BUG FIXES o Fix the bug in runMEME, which always return positive strand for site sequence. CHANGES IN VERSION 1.5.0 ------------------------ NEW FEATURES o searchSeq now works on DNAStringSet. The names in DNAStringSet will be used as seqname in SiteSet. o More user-friendly output in data.frame or GRanges from SiteSet, SiteSetList, et al. o reverseComplement works on XMatrix now. o faster implmentation of searchPairBSgenome