Biobase

DOI:10.18129 / B9.bioc.Biobase

这个包是3.8版本Bioconductor;的稳定,最新的发布版本,请参阅Biobase

Bioconductor Biobase:基函数

Bioconductor版本:3.8

函数所需的许多其他包或取代R功能。

作者:r .绅士,诉凯利·m·摩根,美国鹰

维修工:Bioconductor包维护者<维护者bioconductor.org >

从内部引用(R,回车引用(“Biobase”)):

安装

安装这个包,开始R(版本“3.5”)并输入:

如果(!requireNamespace (“BiocManager”,悄悄地= TRUE)) install.packages (“BiocManager”) BiocManager::安装(“Biobase”)

R的旧版本,请参考适当的Bioconductor释放

文档

查看文档的版本这个包安装在您的系统,开始R和输入:

browseVignettes (“Biobase”)

PDF R脚本 介绍Biobase ExpressionSets
PDF R脚本 esApply介绍
PDF R脚本 笔记eSet开发者bob电竞体育官网
PDF 参考手册
文本 新闻

细节

biocViews 基础设施,软件
版本 2.42.0
Bioconductor自 BioC 1.6 (r - 2.1)或更早(> 14年)
许可证 艺术- 2.0
取决于 R (> = 2.10),BiocGenerics(> = 0.27.1),跑龙套
进口 方法
链接
建议 工具,tkWidgets,所有,RUnit,golubEsets
SystemRequirements
增强了
URL
取决于我 a4Base,a4Core,ACME,affy,affycomp,affycompData,affyContam,affycoretools,affyPLM,affyQCReport,AGDEX,AgiMicroRna,的目标是,所有,altcdfenvs,annaffy,AnnotationDbi,AnnotationForge,antiProfilesData,ArrayExpress,arrayMvout,ArrayTools,,bcellViper,beadarray,beadarrayExampleData,beadarraySNP,bgx,BicARE,bigmelon,BiocCaseStudies,bioDist,BioMVCClass,BioQC,birta,bladderbatch,BLMA,BrainStars,brgedata,相机,cancerclass,cancerdata,卡斯珀,类别,categoryCompare,亚兰,CCPROMISE,cellHTS2,ceu1kg,ceuhm3,CGHbase,CGHcall,CGHregions,魅力,嵌合体,chroGPS,clippda,慢性淋巴细胞白血病,clusterStab,CMA,cn.farms,codelink,colonCA,转换,国王杯,covEB,covRNA,CRCL18,curatedBreastData,curatedMetagenomicData,davidTiling,DESeq,DEXSeq,DFP,diggit,diggitdata,DLBCL,doppelgangR,dressCheck,dsQTL,DSS,dualKS,dyebias,EBarrays,EDASeq,边缘,EGSEA,eisa,epigenomix,epivizrData,etec16s,EuPathDB,ExiMiR,ExpressionAtlas,fabia。,fabiaData,factDesign,fastseg,fibroEset,flowBeads,frma,gaga,gaschYHS,gCMAPWeb,GeneAnswers,GeneExpressionSignature,GeneMeta,geneplotter,geneRecommender,GeneRegionScan,GeneSelectMMD,GeneSelector,geNetClassifier,GEOquery,GGdata,GOexpress,GOFunction,golubEsets,goProfiles,GOstats,GSE62944,GSEABase,GSEABenchmarkeR,GSEAlm,GSVAdata,GWASTools,hapFabia,harbChIP,帮助,Hiiragi2013,hmyriB36,hopach,HTqPCR,htSeqTools,HumanAffyData,humanStemCell,HybridMTest,iBMQ,iCheck,IdeoViz,染色体组型,InPAS,检查,等压线,iterativeBMA,iva,Iyer517,kidpack,leeBamViews,leukemiasEset,LMGene,光民,lumiBarnes,lungExpression,macat,maEndToEnd,mAPKL,MAQCsubset,MAQCsubsetAFX,MAQCsubsetILM,massiR,,MergeMaid,metabomxtr,metagenomeFeatures,metagenomeSeq,MetaGxBreast,MetaGxOvarian,MetaGxPancreas,metavizr,MethPed,methyAnalysis,methylumi,Mfuzz,MiChip,mimager,含羞草,MineICA,海市蜃楼,miRcomp,miRNATarget,MLInterfaces,MMDiff2,MmPalateMiRNA,单片眼镜,msd16s,MSnbase,Mulcom,MultiDataSet,,mvoutData,NanoStringDiff,Neve2006,NOISeq,nondetects,normalize450K,NormqPCR,益生元,omicRexposome,OrderedList,OTUbase,OutlierD,PADOG,pandaR,panp,pcaMethods,pcot2,pdInfoBuilder,pepStat,PGSEA,phenoTest,PLPE,赢钱,普拉达,PREDA,PREDAsampledata,ProData,pRolocGUI,承诺,prostateCancerCamcap,prostateCancerGrasso,prostateCancerStockholm,prostateCancerTaylor,prostateCancerVarambally,prot2D,pumadata,qpcrNorm,qPLEXanalyzer,R453Plus1Toolbox,RbcBook1,rbsurv,rcellminer,rcellminerData,ReadqPCR,犹太人的尊称,RefPlus,rexposome,rHVDM,林格,Risa,Rmagpie,rMAT,RNAinteract,rnaSeqMap,Rnits,Roleswitch,RpsiXML,RTCA,RTopper,RUVnormalizeData,RUVSeq,安全,SCAN.UPC,SeqGSEA,sigaR,SigCheck,siggenes,simpleaffy,simulatorZ,singleCellTK,SpeCond,SPEM,SpikeInSubset,spkTools,splicegear,spliceSites,splineTimeR,STROMA4,SummarizedExperiment,TCGAcrcmiRNA,TCGAcrcmRNA,TDARACNE,tigre,tilingArray,topGO,泛太平洋伙伴关系,tRanslatome,tspair,tweeDEseqCountData,《暮光之城》,撤销,variancePartition,VegaMC,毒蛇,vsn,西瓜,waveTiling,webbioc,xcms,XDE,XINA,,yeastCC
进口我 ABarray,王牌,aCGH,adSplit,affyILM,affyQCReport,AgiMicroRna,AnalysisPageServer,曾帮工,annmap,注释,AnnotationHubData,annotationTools,ArrayExpressHTS,arrayQualityMetrics,ArrayTools,吸引,舞会礼服,BayesKnockdown,BgeeDB,biobroom,bioCancer,biocViews,生命网络,BioSeqClass,biosigner,biosvd,birte,BiSeq,blima,BloodCancerMultiOmics2017,BrainStars,bsseq,BubbleTree,咖啡馆,CAMTHC,癌症,红衣主教,催化剂,ccTutorial,CellScore,CellTrails,ceu1kgv,cgdv17,CGHnormaliter,魅力,ChIPpeakAnno,ChIPQC,ChIPXpress,ChromHeatMap,chromswitch,西塞罗,限幅器,cn.mops,可可,coexnet,cogena,ConsensusClusterPlus,consensusDE,consensusOV,警戒线,crlmm,crossmeta,腰带,周期,cydar,cytofkit,CytoML,ddCt,DEGreport,DESeq2,DeSousa2013,命运,diffloop,不和谐的,DOQTL,easyRNASeq,EBarrays,ecolitk,天哪,ensembldb,erma,esetVis,ExiMiR,ExpressionNormalizationWorkflow,农场,ffpe,FindMyFriends,Fletcher2013a,flowClust,flowCore,flowFP,flowMatch,flowMeans,flowStats,flowType,flowUtils,flowViz,flowWorkspace,FourCSeq,frma,frmaTools,FunciSNP,gCMAP,gCrisprTools,gcrma,genbankr,geneClassifiers,genefilter,GeneMeta,geneRecommender,GeneRegionScan,GeneSelectMMD,《创世纪》,GenomicFeatures,GenomicInteractions,GenomicScores,GEOsubmission,gep2pep,gespeR,GGBase,ggbio,GGtools,girafe,GISPA,GlobalAncova,globaltest,gmapR,GOFunction,GoogleGenomics,gQTLstats,GSRI,GSVA,Gviz,Harshlight,哼哼,hgu133plus2CellScore,HTqPCR,HTSFilter,IdMappingAnalysis,IHWpaper,imageHTS,ImmuneSpaceR,ImpulseDE2,InTAD,IsoGeneGUI,isomiRs,iterClust,JunctionSeq,KEGGandMetacoreDzPathwaysGEO,KEGGdzPathwaysGEO,kimod,kissDE,lapmix,林肯,LiquidAssociation,LRBaseDbi,LVSmiRNA,maanova,makecdfenv,maSigPro,桅杆,mBPCR,MCRestimate,mcsurvdata,MeSHDbi,metaArray,methyAnalysis,MethylAid,methylumi,mfa,MiChip,MIGSA,minfi,MinimumDistance,MiPP,米拉,miRSM,MLSeq,MmPalateMiRNA,mogsa,MoonlightR,拖把,MSnID,MTseeker,MultiAssayExperiment,多屏幕,mzR,NanoStringQCPro,ncdfFlow,NormalyzerDE,npGSEA,诊断,OGSA,oligoClasses,ontoProc,openCyto,oposSOM,oppar,OrderedList,OrganismDbi,先驱者,panp,PathwaySplice,Pbase,pbcmc,PCpheno,phantasus,PharmacoGx,phyloseq,钢琴,plateCore,plethy,plgem,钳子,podkat,帖子,PowerExplorer,ppiStats,普拉达,prebs,proFIA,后代,pRoloc,pRolocdata,承诺,道具,ProteomicsAnnotationHubData,PSEA,psygenet2r,彪马,pvac,pvca,pwOmics,qcmetrics,QDNAseq,qpgraph,限定符,quantro,QuasR,qusage,randPack,readat,ReportingTools,restfulSE,RGalaxy,,Rmagpie,RMassBank,rMAT,的方式,ropls,腐烂,rqubic,Rtreemix,RUVnormalize,SAGx,scmap,seqc,SeqVarTools,ShortRead,sigsquared,SimBindProfiles,simpleaffy,singscore,SLGI,击杀,SNPchip,SomaticSignatures,spkTools,splicegear,海绵,STATegRa,subSeq,synapter,TEQC,TFBSTools,timecourse,TMixClust,三硝基甲苯,topdownr,TSSi,TTMap,《暮光之城》,的作用,VanillaICE,VariantAnnotation,VariantFiltering,VariantTools,vidger,火神,西瓜,XBSeq,yri1kgv
建议我 AUCell,BiocCaseStudies,BiocCheck,BiocGenerics,BiocOncoTK,biotmleData,breastCancerMAINZ,breastCancerNKI,breastCancerTRANSBIG,breastCancerUNT,breastCancerUPP,breastCancerVDX,BSgenome,ccTutorial,CellMapper,cellTree,clustComp,coseq,CountClust,DAPAR,飞镖,dyebiasexamples,EpiDISH,epivizr,epivizrChart,epivizrStandalone,农场,genefu,GENIE3,GenomicRanges,GSAR,Heatplus,HMP16SData,interactiveDisplay,烤肉串,莱斯,limma,Logolas,mammaPrintData,mAPKLData,mCSEA,墨西拿,methyvimData,msa,multiClust,nem,OSAT,pkgDepTools,RcisTarget,RegParallel,rheumaticConditionWOLLBOLD,中华民国,RTCGA,,scmeth,食物,SeqArray,seventyGeneData,紧身的,经验丰富的人,survcomp,TargetScore,TCGAbiolinks,TFutils,TimeSeriesExperiment,tkWidgets,TypeInfo,vbmp,widgetTools,yeastExpData,yeastRNASeq
我的链接
构建报告

包档案

遵循bob 体育网址 指示在R会话中使用这个包。

源包 Biobase_2.42.0.tar.gz
Windows二进制 Biobase_2.42.0.zip(32位和64位)
Mac OS X 10.11(埃尔卡皮坦) Biobase_2.42.0.tgz
源库 git克隆https://git.bioconductor.org/packages/Biobase
源库(开发人员访问) git克隆git@git.bioconductor.org:包/ Biobase
包短Url //www.anjoumacpherson.com/packages/Biobase/
包下载报告 下载数据

文档»

Bioconductor

R/凹口包和文档

支持»

请阅读发布指南。文章质疑Bioconductor到以下位置:

  • 支持网站——关于Bioconductor包的问题
  • 正常词 开发人员邮件列表,包bob电竞体育官网