# # # R代码从装饰图案的装饰图案来源。Rnw“# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块1号:装饰图案。Rnw: 67 - 70 # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #库(oposSOM) env <——opossom.new(列表(dataset.name =“组织”,dim.1stLvlSom = 20)) # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块2号:装饰图案。Rnw: 77 - 81 # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # (opossom.tissues) str (opossom数据。组织,vec.len = 3) env indata < - opossom美元。组织# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块数字3:装饰图案。Rnw: 87 - 94 # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #数据(opossom.tissues)库(Biobase) opossom.tissues.eset = ExpressionSet (assayData = opossom.tissues) opossom.tissues.eset env indata <美元——opossom.tissues.eset # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块数量4:装饰图案。Rnw: 104 - 113 # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # env美元集团。标签< - c(代表(“稳态”,2),“内分泌”、“消化”,“外分泌”、“上皮”,“复制”,“肌肉”,代表(“免疫系统”,2),代表(“神经系统”,2)# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块5号:装饰图案。Rnw: 115 - 124 # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # env美元集团。颜色< - c(代表(“黄金”,2),“red2”、“棕色”、“紫”、“青色”、“粉红色”,“green2”,代表(“blue2”, 2),代表(“灰色”,2)# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块6号:装饰图案。Rnw: 130 - 152 # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # group.info < - data.frame(集团。标签= c(代表(“稳态”,2),“内分泌”、“消化”,“外分泌”、“上皮”,“复制”,“肌肉”,代表(“免疫系统”,2),代表(“神经系统”,2)),组。颜色= c(代表(“黄金”,2),“red2”、“棕色”、“紫”、“青色”、“粉红色”,“green2”,代表(“blue2”, 2),代表(“灰色”,2)),row.names = colnames (opossom.tissues)) # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块7号:装饰图案。Rnw: 154 - 159 # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # opossom.tissues.eset = ExpressionSet (assayData = opossom。组织,phenoData = AnnotatedDataFrame (group.info) opossom.tissues.eset env indata <美元——opossom.tissues.eset # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块8号:装饰图案。Rnw: 169 - 170 (eval = FALSE) # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # opossom.run (env) # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块9号:装饰图案。Rnw:305-310 ################################################### env$preferences$pairwise.comparison.list <- list(list(c("liver","kidney cortex"), c("accumbens","cerebral cortex")), list(c("tongue","small intestine"), c("accumbens","cerebral cortex"))) ################################################### ### code chunk number 10: Vignette.Rnw:336-339 (eval = FALSE) ################################################### ## library(biomaRt) ## mart<-useMart("ensembl") ## listDatasets(mart) ################################################### ### code chunk number 11: Vignette.Rnw:344-347 (eval = FALSE) ################################################### ## library(biomaRt) ## mart<-useMart(biomart="ensembl", dataset="hsapiens_gene_ensembl") ## listFilters(mart) ################################################### ### code chunk number 12: Vignette.Rnw:386-387 ################################################### sessionInfo()