bioassayR

DOI:10.18129/B9.bioc.bioassayR

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, seebioassayR.

Cross-target analysis of small molecule bioactivity

Bioconductor version: 3.7

bioassayR is a computational tool that enables simultaneous analysis of thousands of bioassay experiments performed over a diverse set of compounds and biological targets. Unique features include support for large-scale cross-target analyses of both public and custom bioassays, generation of high throughput screening fingerprints (HTSFPs), and an optional preloaded database that provides access to a substantial portion of publicly available bioactivity data.

Author: Tyler Backman, Ronly Schlenk, Thomas Girke

Maintainer: Tyler Backman

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported source("//www.anjoumacpherson.com/biocLite.R") biocLite("bioassayR")

Documentation

查看文档的版本包age installed in your system, start R and enter:

browseVignettes("bioassayR")

HTML	R Script	Introduction and Examples
PDF		Reference Manual
Text		NEWS

Details

biocViews	Bioinformatics,CellBasedAssays,DataImport,Infrastructure,Metabolomics,MicrotitrePlateAssay,Proteomics,Software,Visualization
Version	1.18.0
In Bioconductor since	BioC 2.13 (R-3.0) (5 years)
License	Artistic-2.0
Depends	R (>= 3.1.0),DBI(>= 0.3.1),RSQLite(>= 1.0.0), methods,Matrix,rjson,BiocGenerics(>= 0.13.8)
Imports	XML,ChemmineR
LinkingTo
Suggests	BiocStyle,RCurl,biomaRt,cellHTS2,knitr,knitcitations,knitrBootstrap,testthat,ggplot2,rmarkdown
SystemRequirements
Enhances
URL	https://github.com/TylerBackman/bioassayR
BugReports	https://github.com/TylerBackman/bioassayR/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Followbob 体育网址 instructions to use this package in your R session.

Source Package	bioassayR_1.18.0.tar.gz
Windows Binary	bioassayR_1.18.0.zip
Mac OS X 10.11 (El Capitan)	bioassayR_1.18.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/bioassayR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/bioassayR
Package Short Url	//www.anjoumacpherson.com/packages/bioassayR/
Package Downloads Report	Download Stats