S4Vectors

DOI:10.18129 / B9.bioc.S4Vectors

这个包是3.7版本Bioconductor;的稳定,最新的发布版本,请参阅S4Vectors

S4向量和类似对象的实现

Bioconductor版本:3.7

S4Vectors包定义了向量和虚拟类和一组通用函数列表扩展普通的语义向量和列表在r包开发人员可以很容易地实现向量或类似对象的具体子类向量或列表。bob电竞体育官网此外,一些低级的具体子类一般利益(例如DataFrame、Rle和支安打)实现S4Vectors包本身(更多的是实现IRanges包和其他Bioconductor基础设施包)。

作者:h .页,m·劳伦斯和p . Aboyoun

维修工:Bioconductor包维护者<维护者bioconductor.org >

从内部引用(R,回车引用(“S4Vectors”)):

安装

安装这个包,开始R和输入:

# #试试http://如果https:// url不支持源(“//www.anjoumacpherson.com/biocLite.R”) biocLite (“S4Vectors”)

文档

查看文档的版本这个包安装在您的系统,开始R和输入:

browseVignettes (“S4Vectors”)

PDF R脚本 一个快速概述S4类的系统
PDF R脚本 S4Vectors包的概述
PDF R脚本 Rle技巧和窍门
PDF 参考手册
文本 新闻

细节

biocViews DataRepresentation,基础设施,软件
版本 0.18.3
Bioconductor自 BioC 3.0 (r - 3.1)(4年)
许可证 艺术- 2.0
取决于 R(> = 3.3.0)、方法、效用,统计,stats4,BiocGenerics(> = 0.23.3)
进口
链接
建议 IRanges,GenomicRanges,SummarizedExperiment,矩阵,DelayedArray,ShortRead,,data.table,RUnit,BiocStyle
SystemRequirements
增强了
URL
取决于我 altcdfenvs,AnnotationHubData,ATACseqQC,Biostrings,BiSeq,BSgenome,bumphunter,CellMapper,CexoR,chimeraviz,ChIPComp,ChIPpeakAnno,chipseq,ChIPseqR,ClassifyR,食典委,coseq,CSAR,DelayedArray,DESeq2,DEXSeq,DirichletMultinomial,DMCHMM,DMRcaller,epigenomix,eQTL,ExperimentHubData,ExpressionAtlas,fCCAC,GA4GHclient,generegulation,GenomeInfoDb,GenomicAlignments,GenomicFeatures,GenomicRanges,GenomicScores,GenomicTuples,girafe,groHMM,Gviz,HelloRanges,htSeqTools,InPAS,InTAD,感兴趣,IRanges,meshr,MotifDb,NADfinder,OTUbase,pd.ag,pd.aragene.1.0.st,pd.aragene.1.1.st,pd.ath1.121501,pd.barley1,pd.bovgene.1.0.st,pd.bovgene.1.1.st,pd.bovine,pd.bsubtilis,pd.cangene.1.0.st,pd.cangene.1.1.st,pd.canine,pd.canine.2,pd.celegans,pd.chicken,pd.chigene.1.0.st,pd.chigene.1.1.st,pd.chogene.2.0.st,pd.chogene.2.1.st,pd.citrus,pd.clariom.d.human,pd.clariom.s.human,pd.clariom.s.human.ht,pd.clariom.s.mouse,pd.clariom.s.mouse.ht,pd.clariom.s.rat,pd.clariom.s.rat.ht,pd.cotton,pd.cyngene.1.0.st,pd.cyngene.1.1.st,pd.cyrgene.1.0.st,pd.cyrgene.1.1.st,pd.cytogenetics.array,pd.drogene.1.0.st,pd.drogene.1.1.st,pd.drosgenome1,pd.drosophila.2,pd.e.coli.2,pd.ecoli,pd.ecoli.asv2,pd.elegene.1.0.st,pd.elegene.1.1.st,pd.equgene.1.0.st,pd.equgene.1.1.st,pd.felgene.1.0.st,pd.felgene.1.1.st,pd.fingene.1.0.st,pd.fingene.1.1.st,pd.genomewidesnp.5,pd.genomewidesnp.6,pd.guigene.1.0.st,pd.guigene.1.1.st,pd.hc.g110,pd.hg.focus,pd.hg.u133.plus.2,pd.hg.u133a,pd.hg.u133a.2,pd.hg.u133a.tag,pd.hg.u133b,pd.hg.u219,pd.hg.u95a,pd.hg.u95av2,pd.hg.u95b,pd.hg.u95c,pd.hg.u95d,pd.hg.u95e,pd.hg18.60mer.expr,pd.ht.hg.u133.plus.pm,pd.ht.hg.u133a,pd.ht.mg.430a,pd.hta.2.0,pd.hu6800,pd.huex.1.0.st.v2,pd.hugene.1.0.st.v1,pd.hugene.1.1.st.v1,pd.hugene.2.0.st,pd.hugene.2.1.st,pd.maize,pd.mapping250k.nsp,pd.mapping250k.sty,pd.mapping50k.hind240,pd.mapping50k.xba240,pd.margene.1.0.st,pd.margene.1.1.st,pd.medgene.1.0.st,pd.medgene.1.1.st,pd.medicago,pd.mg.u74a,pd.mg.u74av2,pd.mg.u74b,pd.mg.u74bv2,pd.mg.u74c,pd.mg.u74cv2,pd.mirna.1.0,pd.mirna.2.0,pd.mirna.3.0,pd.mirna.4.0,pd.moe430a,pd.moe430b,pd.moex.1.0.st.v1,pd.mogene.1.0.st.v1,pd.mogene.1.1.st.v1,pd.mogene.2.0.st,pd.mogene.2.1.st,pd.mouse430.2,pd.mouse430a.2,pd.mta.1.0,pd.mu11ksuba,pd.mu11ksubb,pd.nugo.hs1a520180,pd.nugo.mm1a520177,pd.ovigene.1.0.st,pd.ovigene.1.1.st,pd.pae.g1a,pd.plasmodium.anopheles,pd.poplar,pd.porcine,pd.porgene.1.0.st,pd.porgene.1.1.st,pd.rabgene.1.0.st,pd.rabgene.1.1.st,pd.rae230a,pd.rae230b,pd.raex.1.0.st.v1,pd.ragene.1.0.st.v1,pd.ragene.1.1.st.v1,pd.ragene.2.0.st,pd.ragene.2.1.st,pd.rat230.2,pd.rcngene.1.0.st,pd.rcngene.1.1.st,pd.rg.u34a,pd.rg.u34b,pd.rg.u34c,pd.rhegene.1.0.st,pd.rhegene.1.1.st,pd.rhesus,pd.rice,pd.rjpgene.1.0.st,pd.rjpgene.1.1.st,pd.rn.u34,pd.rta.1.0,pd.rusgene.1.0.st,pd.rusgene.1.1.st,pd.s.aureus,pd.soybean,pd.soygene.1.0.st,pd.soygene.1.1.st,pd.sugar.cane,pd.tomato,pd.u133.x3p,pd.vitis.vinifera,pd.wheat,pd.x.laevis.2,pd.x.tropicalis,pd.xenopus.laevis,pd.yeast.2,pd.yg.s98,pd.zebgene.1.0.st,pd.zebgene.1.1.st,pd.zebrafish,plethy,RIPSeeker,RnBeads,segmentSeq,SNPlocs.Hsapiens.dbSNP141.GRCh38,SummarizedBenchmark,topdownr,三层,VariantTools,火神,XtraSNPlocs.Hsapiens.dbSNP141.GRCh38,XVector
进口我 affycoretools,ALDEx2,AllelicImbalance,高山,amplican,anamiR,AneuFinder,AnnotationDbi,AnnotationForge,AnnotationHub,annotatr,ArrayTV,ASpli,BadRegionFinder,舞会礼服,基础知识,BasicSTARRseq,BiocOncoTK,biovizBase,BiSeq,BitSeq,bnbc,BPRMeth,分歧点,BSgenome,bsseq,CAGEfightR,篮球选手,卡斯珀,催化剂,ccfindR,cgdv17,别致的,ChIPanalyser,chipenrich,chipenrich.data,ChIPexoQual,ChIPQC,ChIPseeker,ChIPSeqSpike,chromstaR,chromswitch,chromVAR,CINdex,切肉刀,clusterExperiment,cn.mops,cn,CNPBayes,CNVPanelizer,彗星,compEpiTools,consensusSeekeR,contiBAIT,copynumber,文案,CoverageView,CRISPRseek,CrispRVariants,csaw,CTDquerier,腰带,curatedMetagenomicData,curatedTCGAData,customProDB,cydar,DChIPRep,debrowser,解读,反编排,DEGreport,DelayedMatrixStats,derfinder,derfinderHelper,derfinderPlot,DEScan2,DiffBind,diffcyt,diffHic,diffloop,DMRcate,dmrseq,剂量,DRIMSeq,DropletUtils,easyRNASeq,eegc,埃尔默,EnrichmentBrowser,ensembldb,ensemblVEP,epivizr,epivizrData,epivizrStandalone,erma,esATAC,EventPointer,ExperimentHub,facopy,fastseg,FindMyFriends,fitCons.UCSC.hg19,FunciSNP,GA4GHshiny,gcapc,GDSArray,genbankr,genefilter,GeneRegionScan,《创世纪》,GeneStructureTools,GenoGAM,genomation,genomeIntervals,GenomicAlignments,GenomicDataCommons,GenomicFiles,GenomicInteractions,genoset,GGBase,ggbio,GGtools,Glimma,gmapR,GoogleGenomics,还装有,哥特,gQTLBase,gQTLstats,GRmetrics,GSEABenchmarkeR,GUIDEseq,gwascat,h5vc,HDF5Array,HiCcompare,hipathia,hmdbQuery,HMP16SData,HTSeqGenie,理想的,ima,ImpulseDE2,检查,InteractionSet,InterMineR,iSEE,isomiRs,iva,ivygapSE,IWTomics,JunctionSeq,karyoploteR,烤肉串,loci2path,萝拉,M3D,MACPET,MADSEQ,MafDb.1Kgenomes.phase1.GRCh38,MafDb.1Kgenomes.phase1.hs37d5,MafDb.1Kgenomes.phase3.GRCh38,MafDb.1Kgenomes.phase3.hs37d5,MafDb.ESP6500SI.V2.SSA137.GRCh38,MafDb.ESP6500SI.V2.SSA137.hs37d5,MafDb.ExAC.r1.0.GRCh38,MafDb.ExAC.r1.0.hs37d5,MafDb.ExAC.r1.0.nonTCGA.GRCh38,MafDb.ExAC.r1.0.nonTCGA.hs37d5,MafDb.gnomAD.r2.0.1.GRCh38,MafDb.gnomAD.r2.0.1.hs37d5,MafDb.gnomADex.r2.0.1.GRCh38,MafDb.gnomADex.r2.0.1.hs37d5,MafDb.TOPMed.freeze5.hg19,MafDb.TOPMed.freeze5.hg38,马提尼,桅杆,mCSEA,,metagenomeFeatures,methInheritSim,methylInheritance,methylKit,methylPipe,methylumi,mimager,minfi,MinimumDistance,米拉,海市蜃楼,missRows,MMDiff2,马赛克,motifbreakR,motifmatchr,MotIV,mpra,msa,msgbsR,MSnbase,MultiAssayExperiment,MultiDataSet,MutationalPatterns,mygene,myvariant,NarrowPeaks,nucleoSim,诊断,oligoClasses,ontoProc,openPrimeR,ORFik,Organism.dplyr,OrganismDbi,panelcn.mops,PathwaySplice,Pbase,pcaExplorer,pd.atdschip.tiling,pdInfoBuilder,PGA,phastCons100way.UCSC.hg19,phastCons100way.UCSC.hg38,phastCons7way.UCSC.hg38,图片,,plyranges,pogo,聚酯,PowerExplorer,pqsfinder,prebs,procoil,PureCN,qcmetrics,qpgraph,QuasR,R3CPET,R453Plus1Toolbox,RaggedExperiment,RareVariantVis,Rariant,Rcade,美国广播公司,重新计票,地区,regionReport,regsplice,REMP,Repitools,restfulSE,rexposome,RGMQL,rhdf5client,RiboProfiling,RJMCMCNucleosomes,RMassBank,RNAprobR,咆哮,Rqc,Rsamtools,RTCGAToolbox,研制,rtracklayer,SC3,,scDD,scmap,SCnorm,scPipe,食物,SeqArray,seqCAT,seqplots,seqsetvis,SeqSQC,SeqVarTools,sevenbridges,sevenC,SGSeq,ShortRead,simulatorZ,SingleCellExperiment,singleCellTK,skewr,击杀,SNPchip,SNPhood,SNPlocs.Hsapiens.dbSNP.20101109,SNPlocs.Hsapiens.dbSNP141.GRCh38,SNPlocs.Hsapiens.dbSNP144.GRCh37,SNPlocs.Hsapiens.dbSNP144.GRCh38,SNPlocs.Hsapiens.dbSNP149.GRCh38,SNPlocs.Hsapiens.dbSNP150.GRCh38,SNPlocs.Hsapiens.dbSNP151.GRCh38,soGGi,SomaticCancerAlterations,SomaticSignatures,SplicingGraphs,分裂,srnadiff,斯坦,SummarizedExperiment,TarSeqQC,TCGAbiolinks,TCGAutils,TFBSTools,TFHAZ,TFutils,三硝基甲苯,trackViewer,transcriptR,TransView,时尚的,tRNAscanImport,TSRchitect,TSSi,TVTB,twoddpcr,TxRegInfra,VanillaICE,VariantAnnotation,VariantFiltering,wavClusteR,wiggleplotr,xcms,XtraSNPlocs.Hsapiens.dbSNP141.GRCh38,XtraSNPlocs.Hsapiens.dbSNP144.GRCh37,XtraSNPlocs.Hsapiens.dbSNP144.GRCh38,XVector,山药
建议我 alternativeSplicingEvents.hg19,alternativeSplicingEvents.hg38,BiocGenerics,epivizrChart,GWASTools,RTCGA,飞溅,TFEA.ChIP
我的链接 Biostrings,cn,解读,GenomicAlignments,GenomicRanges,IRanges,烤肉串,MatrixRider,Rsamtools,rSFFreader,rtracklayer,ShortRead,三层,VariantAnnotation,VariantFiltering,XVector
构建报告

包档案

遵循bob 体育网址 指示在R会话中使用这个包。

源包 S4Vectors_0.18.3.tar.gz
Windows二进制 S4Vectors_0.18.3.zip(32位和64位)
Mac OS X 10.11(埃尔卡皮坦) S4Vectors_0.18.3.tgz
源库 git克隆https://git.bioconductor.org/packages/S4Vectors
源库(开发人员访问) git克隆git@git.bioconductor.org:包/ S4Vectors
包短Url //www.anjoumacpherson.com/packages/S4Vectors/
包下载报告 下载数据

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