IHW

DOI:10.18129/B9.bioc.IHW

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, seeIHW.

Independent Hypothesis Weighting

Bioconductor version: 3.7

Independent hypothesis weighting (IHW) is a multiple testing procedure that increases power compared to the method of Benjamini and Hochberg by assigning data-driven weights to each hypothesis. The input to IHW is a two-column table of p-values and covariates. The covariate can be any continuous-valued or categorical variable that is thought to be informative on the statistical properties of each hypothesis test, while it is independent of the p-value under the null hypothesis.

Author: Nikos Ignatiadis [aut, cre], Wolfgang Huber [aut]

Maintainer: Nikos Ignatiadis

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported source("//www.anjoumacpherson.com/biocLite.R") biocLite("IHW")

Documentation

查看文档的版本包age installed in your system, start R and enter:

browseVignettes("IHW")

HTML	R Script	Introduction to IHW
PDF		Reference Manual

Details

biocViews	MultipleComparison,RNASeq,Software
Version	1.8.0
In Bioconductor since	BioC 3.3 (R-3.3) (2.5 years)
License	Artistic-2.0
Depends	R (>= 3.3.0)
Imports	methods,slam,lpsymphony,fdrtool,BiocGenerics
LinkingTo
Suggests	ggplot2,dplyr,gridExtra,scales,DESeq2,airway,testthat,Matrix,BiocStyle,knitr,rmarkdown,devtools
SystemRequirements
Enhances
URL
Depends On Me	IHWpaper
Imports Me	ideal
Suggests Me	BloodCancerMultiOmics2017,DESeq2,SummarizedBenchmark
Links To Me
Build Report

Package Archives

Followbob 体育网址 instructions to use this package in your R session.

Source Package	IHW_1.8.0.tar.gz
Windows Binary	IHW_1.8.0.zip
Mac OS X 10.11 (El Capitan)	IHW_1.8.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/IHW
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/IHW
Package Short Url	//www.anjoumacpherson.com/packages/IHW/
Package Downloads Report	Download Stats