BioBase.

DOI:10.18129 / b9.bioc.biobase.

此套餐适用于Biocumonds 3.7版;对于稳定的最新版本版本,请参阅BioBase.

Biobase:生物导体的基本功能

生物导体版本:3.7

许多其他包或替换R功能所需的功能。

作者:R. Gentleman,V. Carey,M. Morgan,S. Falcon

Maintainer: Bioconductor Package Maintainer < Maintainer,请登录bioconductor.org>

引用(从R中,输入引用(“Biobase”)):

安装

要安装这个包,启动R并输入:

##尝试HTTP://如果不支持HTTPS:// URL源(“https://biocumon.org/bioclite.r”)Bioclite(“Biobase”)

文档

要查看系统中安装的这个包的版本文档,启动R并输入:

browseVignettes(“Biobase”)

PDF R脚本 介绍bibase和ExpressionSets
PDF R脚本 esApply介绍
PDF R脚本 eSet开发人员的注意事项bob电竞体育官网
PDF 参考手册
文本 消息

细节

biocViews 基础设施,软件
版本 2.40.0
Bioconductor自 BIOC 1.6(R-2.1)或更早版本(> 13.5岁)
许可证 艺术- 2.0
取决于 R (> = 2.10),BiocGenerics(> = 0.3.2),跑龙套
进口 方法
链接
建议 工具,tkWidgets,所有,RUnit,golubEsets
系统要求
增强了
URL
取决于我 a4Base,A4Core.,ACME,敬服,affycomp,affycompData,affyContam,affycoretools,affyPLM,affyqcreport.,AGDEX,AgiMicroRna,目的,所有,altcdfenvs,annaffy,AnnotationDbi,AnnotationForge,antiprofilesdata.,ArrayExpress,arrayMvout,ArrayTools.,,Bcellviper.,Beadarray.,beadarrayexampledata.,beadarraysnp.,bgx,BicARE,bigmelon,Bioccasestudies.,生物派,BiomVccClass.,Bioqc.,birta,bladderbatch,布尔玛,脑创意,brgedata,相机,cancerclass,CARMADDATA.,红衣主教,卡斯珀,类别,CompoundationCompare.,亚兰,ccpromise.,cellHTS2,Ceu1kg.,ceuhm3,CGHbase,CGHcall,CGHregions,魅力,cheung2010,嵌合体,Chrogps.,clippda,慢性淋巴细胞白血病,clusterStab,CMA,cn.farms,Codelink.,Colonca.,转换,COPA,covEB,covRNA,CRCL18,施用布莱特塔,curatedMetagenomicData,davidTiling,DESEQ.,Dexseq.,DFP,diggit,diggitdata,DLBCL,DOPPELGANGR.,梳妆台,dsQTL,DSS,二元人士,染料纤维,ebarrays.,EDASeq,边缘,EGSEA.,eisa,Epigenomix.,Epivizrdata.,etec16s,ExiMiR,表达式,法比亚,Fabiadata.,factDesign,fastseg,fibroEset,flowBeads,frma.,加格,gaschYHS,gcmapweb.,GeneAnswers,geneexpressionsignature,GeneMeta,Geneplotter.,GenereCommender.,GeneRegionScan,geneselectmmd.,Geneselector.,geNetClassifier,地理曲线,GGdata,goexpress.,凑功能,golubEsets,Goprofiles.,GOstats,GSE62944,GSEABASE.,GSEABenchmarkeR,GSEALM,GSVAdata,GWASTools,Hapfabia.,harbChIP,帮助,hiiragi2013,HMYRIB36.,hopach,HTqPCR,htseqtools.,humanaffydata.,humanStemCell,HybridMTest,iBMQ,iCheck,IdeoViz,Idiogram.,InPAS,检查,等压线,迭代拍摄,iva,Iyer517,kidpack,Leebamviews.,白血病eset,LMGene,光民,lumiBarnes,lungExpression,马特,mAPKL,MAQCsubset,MAQCsubsetAFX,MAQCsubsetILM,massiR,一顿饭,MergeMaid,metabomxtr,metagenomeFeatures,MetagenomeSQ.,MetaGxBreast,MetaGxOvarian,MetaGxOvarian,MetaGxPancreas,metavizr,甲基,甲烷分析,弥撒,mfuzz.,MiChip,mimager,含羞草,雷尼卡,幻影,Mircomp.,miRNATarget,ml interfaces.,mmdiff2.,mmpalatemirna.,单片,msd16s,msnbase.,Mulcom,多atAdataset.,Multtest.,mvoutdata.,NanoStringDiff,Neve2006,NOISeq,nondetects,normalize450K,诺斯QPCR.,oligo.,omicRexposome,OrderedList,otubase.,vielierd.,PADOG,pandaR,PAnnBuilder,PANP.,pcaMethods,pcot2,pdInfoBuilder,pepStat,PGSEA,现象,PLPE,赢钱,普拉达,预先,PREDAsampledata,Prodata.,pRolocGUI,承诺,prostatecancercamcap.,Prostatecancergrasso.,prostateCancerStockholm,Prostatecancertaylor.,prostateCancerVarambally,PROT2D.,PumaData.,qpcrNorm,R453Plus1Toolbox,RbcBook1,rbsurv.,rcellminer,rcellminerData,ReadqPCR,犹太人的尊称,refplus.,rexposome.,rhvdm.,林格,Risa.,rmagpie.,rmat.,RNAinteract,rnaSeqMap,Rnits,Roleswitch,RpsiXML,RTCA,RTopper,ruvnormalizatiaata,RUVSeq,安全的,scan.upc.,撒尿,SeqGSEA,sigaR,sigcheck.,siggenes.,simpleaff.,simulatorz.,singlecelltk.,spec,sp,SpikeInSubset,spktools.,splicegear,spliceSites,泼丝体,Strome4.,概括分析,TCGAcrcmiRNA,TCGAcrcmRNA,TDARACNE,tigre,tilingArray,顶点,泛太平洋伙伴关系,tRanslatome,tspair,tweeDEseqCountData,《暮光之城》,撤销,variancepartition.,VEGMC,毒蛇,vsn,西瓜,waveTiling,webbioc,xcms,XDE.,,yeastCC
进口我 abarray.,aCGH,adSplit,yefyilm.,affyqcreport.,AgiMicroRna,AnalysisPageServer,曾帮工,annmap,注释,annotationhubdata.,annotationTools,ArrayExpressHTS,arrayQualityMetrics,ArrayTools.,吸引,舞会礼服,BayesKnockdown,BgeeDB,biobroom,bioCancer,biocViews,生命网络,BioSeqClass,biosigner,biosvd,birte,BiSeq,宝石,BloodCancerMultiOmics2017,脑创意,BSSeq.,Bubbletree.,咖啡馆,癌症,催化剂,ccTutorial,CellScore,ceu1kgv,cgdv17,chnnormaliter.,魅力,Chippeakanno.,chipqc.,ChIPXpress,ChromheatMap.,ChromSchitch.,限幅器,cn.mops,coexnet.,cogena,共识,consensusOV,crlmm,crossmeta,腹带,周期,Cydar.,cytofkit,cytoml.,ddCt,重新评估,DESeq2,DeSousa2013,命运,差异,不和谐,DOQTL,easyRNASeq,ebarrays.,ecolitk,天哪,Ensembldb.,erma.,esetVis,ExiMiR,ExpressionNormalizationWorkflow,农场,FFPE.,FindMyFriends,Fletcher2013a,流通,flowCore,flowFP,flowMatch,flowMeans,flowStats,flowType,flowUtils,flowViz,FlowWorkspace.,FourCSeq,frma.,Frmatools.,funcisnp.,GCMAP.,gCrisprTools,gcrma.,GenBankr.,geneClassifiers,genefilter,GeneMeta,GenereCommender.,GeneRegionScan,geneselectmmd.,创世纪,GenomicFeatures,GenomicInteractions,基因组织,GEOsubmission,gep2pep.,gespeR,GGBase.,ggbio,GGTools.,Girafe.,GISPA,全球化境,GMAPR.,凑功能,GoogleGenomics.,gQTLstats,GSRI,GSVA,GVIZ.,Harshlight,,hgu133plus2cellscore.,HTqPCR,HTSFilter,IdmappingAnalysis.,ihwpaper.,imageHTS,ImmuneSpaceR,拖累2.,InTAD,IsoGeneGUI,Isomirs.,迭代,JunctionSeq.,KEGGandMetacoreDzPathwaysGEO,KEGGdzPathwaysGEO,kimod.,kissDE,Lapmix.,,液晶硅类别,LVSmiRNA,Maanova.,makecdfenv.,masigpro.,桅杆,mBPCR,mcrestimate,MeSHDbi,metaArray,甲烷分析,METHYLAID.,弥撒,mfa,MiChip,MIGSA,minfi,MinimumDistance,MiPP,米拉,MLSeq,mmpalatemirna.,mogsa,moonlightr.,拖把,msnid.,MultiAsaySayexperiment.,多股票,mzR,nanostringqcpro.,ncdfflow.,npGSEA,核核酸,OGSA,oligoClasses,ontoproc.,opencyto.,挥之不忘,oppar,OrderedList,Organismdbi.,PAnnBuilder,PANP.,PathwaySplice,PBASE.,pbcmc,PCpheno,phantasus,Pharmacogx.,文学,钢琴,plateCore,plethy,plgem,钳子,podkat,帖子,PowerExplorer,ppiStats,普拉达,prebs,挑战,后代,ProMoC.,prolocdata.,承诺,道具,ProteomicsAnnotationHubData,PSEA,psygenet2r,彪马,pvac,pvca,粉末,qcmetrics,QDNASEQ.,qpgraph,限定者,quantro,QuasR,qusage,randPack,readat,ReadqPCR,ReportingTools.,restfulSE,林葛普查组织,rgalaxy.,,rmagpie.,rmassbank.,rmat.,的方式,ropls,腐烂,rqubic.,RTCGAToolbox,rtreemix.,RUVnormalize,Sagx.,SCMAP.,SEQC,SeqVarTools,缩短,sigsquared.,simbindprofiles.,simpleaff.,singscore,SLGI,,SNPCHIP.,SomaticSignatures,spktools.,splicegear,海绵,议案,潜艇,扳机,TEQC,TFBStools.,TFutils,时间课程,TMixClust,三硝基甲苯,topdownr,TSSi,ttmap.,《暮光之城》,的作用,香草,VariantAnnotation,变型滤波器,Varianttools.,vidger.,火神,西瓜,XBSeq,yri1kgv
建议我 AUCell,Bioccasestudies.,BiocCheck,BiocGenerics,biotmleData,breastCancerMAINZ,Breastcancernki.,breastCancerTRANSBIG,breastCancerUNT,乳腺癌,breastCancerVDX,BSgenome,ccTutorial,CellMapper,cellTree,clustComp,coseq,countblust.,DAPAR,,染腹沙曲面,EpiDISH,epivizr,epivizrChart,epivizrStandalone,农场,Genefu.,GENIE3,Genomicranges.,GlobalAncova,GSAR,Heatplus,HMP16SData,互动神血,烤肉串,莱斯,limma,Logolas,mammaprintdata.,mAPKLData,mCSEA,墨西拿,methyvimData,MSA.,multiClust,nem,OSAT,pkgDepTools,RcisTarget,rheumaticConditionWOLLBOLD,中华民国,RTCGA.,scmeth,食物,SeqArray,七百年人,stager.,survcomp,TargetScore,TCGAbiolinks,tkWidgets,TypeInfo,vbmp,widgetTools,yeastExpData,yeastRNASeq
链接给我
建立报告

包档案包

遵循bob 体育网址 在你的R会话中使用这个包的说明。

源包 biobase_2.40.0.tar.gz.
Windows二进制文件 Biobase_2.40.0.zip(32位和64位)
Mac OS X 10.11 (El Capitan) Biobase_2.40.0.tgz
源库 git克隆https://git.bioconductor.org/packages/Biobase
源存储库(开发人员访问) git clone git@git.biocondion.org:包/生物酶
包短网址 http://biocidodder.org/packages/biobase/
包下载报告 下载统计信息

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