bsgenome.

DOI：10.18129 / b9.bioc.bsgenome.

此套餐适用于Biocumonds 3.7版;对于稳定的最新版本版本，请参阅bsgenome.。

高效表达全基因组及其snp的软件基础设施

生物导体版本：3.7

基于所有生物的基因组数据包共享基础架构。

作者:Herve页面

维护者:H. Pagès

安装

要安装此包，请启动R并输入：

##尝试http://如果https:// url不支持源(“//www.anjoumacpherson.com/biocLite.R”)biocLite(“BSgenome”)

文件

要查看系统中安装此包版本的文档，请启动r并输入：

BROWSEVIGNETTES（“BSGENOME”）

PDF.	r script.	使用生物驱动器和BSGenome数据包进行高效的基因组
PDF.	r script.	如何伪造bs基因组数据包
PDF.		参考手册
文本		消息

细节

biocViews	注释那datarepresentation那遗传学那基础设施那单核苷酸多态性那序列术那软件
版本	1.48.0
在生物导体中以来	BIOC 1.9（R-2.4）（12年）
执照	艺术-2.0
依靠	R(>= 2.8.0)，方法生物根系（> = 0.13.8），S4Vectors（> = 0.17.28），IRanges（> = 2.13.16），GenomeInfoDb(> = 1.15.2),Genomicranges.(> = 1.31.10),Biostrings（> = 2.47.6），rtracklayer(> = 1.39.7)
进口	方法，Utils，统计数据，生物根系那S4Vectors那IRanges那xvector.那GenomeInfoDb那Genomicranges.那Biostrings那RSAMTOOLS.那rtracklayer
链接到
建议	生物粘合剂那Biobase那bsgenome.celegans.ucsc.CE2.那bsgenome.hsapiens.ucsc.hg38那BSgenome.Hsapiens.UCSC.hg38.masked那bsgenome.mmusculus.ucsc.mm10那bsgenome.rnorvegicus.ucsc.rn5.那bsgenome.scerevisiae.ucsc.saccer1.那txdb.hsapiens.ucsc.hg38.knowngene.那txdb.mmusculus.ucsc.mm10.knowngene.那snplocs.hsapiens.dbsnp144.grch38.那XtraSNPlocs.Hsapiens.dbSNP144.GRCh38那hgu95av2probe.那运行
SystemRequirements
加强
URL
取决于我	注解那BSgenome.Alyrata.JGI.v1那bsgenome.amellifera.beebase.assembly4.那BSgenome.Amellifera.UCSC.apiMel2那BSgenome.Amellifera.UCSC.apiMel2.masked那bsgenome.athalana.tair.04232008那bsgenome.athalana.tair.tair9.那BSgenome.Btaurus.UCSC.bosTau3那bsgenome.btaurus.ucsc.bostau3.masked.那BSgenome.Btaurus.UCSC.bosTau4那BSgenome.Btaurus.UCSC.bosTau4.masked那BSgenome.Btaurus.UCSC.bosTau6那BSgenome.Btaurus.UCSC.bosTau6.masked那BSgenome.Btaurus.UCSC.bosTau8那BSgenome.Celegans.UCSC.ce10那BSgenome.Celegans.UCSC.ce11那bsgenome.celegans.ucsc.CE2.那bsgenome.celegans.ucsc.CE6.那BSgenome.Cfamiliaris.UCSC.canFam2那BSgenome.Cfamiliaris.UCSC.canFam2.masked那BSgenome.Cfamiliaris.UCSC.canFam3那BSgenome.Cfamiliaris.UCSC.canFam3.masked那bsgenome.dmelanogaster.ucsc.dm2.那bsgenome.dmelanogaster.ucsc.dm2.masked.那bsgenome.dmelanogaster.ucsc.dm3.那bsgenome.dmelanogaster.ucsc.dm3.masked.那bsgenome.dmelanogaster.ucsc.dm6.那BSgenome.Drerio.UCSC.danRer10那bsgenome.drerio.ucsc.danrer5.那bsgenome.drerio.ucsc.danrer5.masked.那bsgenome.drerio.ucsc.danrer6.那BSgenome.Drerio.UCSC.danRer6.masked那bsgenome.drerio.ucsc.danrer7.那BSgenome.Drerio.UCSC.danRer7.masked那BSgenome.Ecoli.NCBI.20080805那bsgenome.gaculeatus.ucsc.gasacu1.那BSgenome.Gaculeatus.UCSC.gasAcu1.masked那bsgenome.ggallus.ucsc.galgal3.那BSgenome.Ggallus.UCSC.galGal3.masked那bsgenome.ggallus.ucsc.galgal4.那BSgenome.Ggallus.UCSC.galGal4.masked那bsgenome.ggallus.ucsc.galgal5.那bsgenome.hsapiens.1000Genomes.HS37D5那BSgenome.Hsapiens.NCBI.GRCh38那bsgenome.hsapiens.ucsc.hg17那bsgenome.hsapiens.ucsc.hg17.masked.那bsgenome.hsapiens.ucsc.hg18那BSgenome.Hsapiens.UCSC.hg18.masked那bsgenome.hsapiens.ucsc.hg19.那bsgenome.hsapiens.ucsc.hg19.masked.那bsgenome.hsapiens.ucsc.hg38那BSgenome.Hsapiens.UCSC.hg38.masked那BSgenome.Mfascicularis.NCBI.5.0那bsgenome.mfuro.ucsc.musfur1.那bsgenome.mmulatta.ucsc.Rhemac2.那BSgenome.Mmulatta.UCSC.rheMac2.masked那bsgenome.mmulatta.ucsc.Rhemac3.那bsgenome.mmulatta.ucsc.Rhemac3.Masked.那bsgenome.mmulatta.ucsc.Rhemac8.那bsgenome.mmusculus.ucsc.mm10那BSgenome.Mmusculus.UCSC.mm10.masked那BSgenome.Mmusculus.UCSC.mm8那bsgenome.mmusculus.ucsc.mm8.masked.那BSgenome.Mmusculus.UCSC.mm9那bsgenome.mmusculus.ucsc.mm9.masked.那bsgenome.osativa.msu.msu7.那BSgenome.Ptroglodytes.UCSC.panTro2那bsgenome.ptroglodytes.ucsc.pantro2.masked.那BSgenome.Ptroglodytes.UCSC.panTro3那bsgenome.ptroglodytes.ucsc.pantro3.masked.那BSgenome.Ptroglodytes.UCSC.panTro5那BSgenome.Ptroglodytes.UCSC.panTro6那bsgenome.rnorvegicus.ucsc.rn4.那bsgenome.rnorvegicus.ucsc.rn4.masked.那bsgenome.rnorvegicus.ucsc.rn5.那bsgenome.rnorvegicus.ucsc.rn5.masked.那bsgenome.rnorvegicus.ucsc.rn6.那bsgenome.scerevisiae.ucsc.saccer1.那bsgenome.scerevisiae.ucsc.saccer2.那bsgenome.scerevisiae.ucsc.saccer3.那bsgenome.sscrofa.ucsc.susscr11.那bsgenome.sscrofa.ucsc.susscr3.那bsgenome.sscrofa.ucsc.susscr3.masked.那bsgenome.tgondii.toxodb.7.0.那bsgenome.tguttata.ucsc.taegut1那bsgenome.tguttata.ucsc.taegut1.masked.那bsgenome.tguttata.ucsc.taegut2.那BSgenome.Vvinifera.URGI.IGGP12Xv0那BSgenome.Vvinifera.URGI.IGGP12Xv2那bsgenome.vvinifera.urgi.iggp8x.那ChIPanalyser那Cleanupdtseq.那哥特那Helloranges.那htseqtools.那leeBamViews那MEDIPS那motifrg.那REDseq那林那RGADEM.那snplocs.hsapiens.dbsnp.20120608那snplocs.hsapiens.dbsnp141.grch38.那snplocs.hsapiens.dbsnp142.grch37.那snplocs.hsapiens.dbsnp144.grch37.那snplocs.hsapiens.dbsnp144.grch38.那snplocs.hsapiens.dbsnp149.grch38.那snplocs.hsapiens.dbsnp150.grch38.那snplocs.hsapiens.dbsnp151.grch38.那xtrasnplocs.hsapiens.dbsnp141.grch38.那XtraSNPlocs.Hsapiens.dbSNP144.GRCh37那XtraSNPlocs.Hsapiens.dbSNP144.GRCh38
进口我	AllelicImbalance那Atacseqqc.那击败那BSgenome.Alyrata.JGI.v1那bsgenome.amellifera.beebase.assembly4.那BSgenome.Amellifera.UCSC.apiMel2那BSgenome.Amellifera.UCSC.apiMel2.masked那bsgenome.athalana.tair.04232008那bsgenome.athalana.tair.tair9.那BSgenome.Btaurus.UCSC.bosTau3那bsgenome.btaurus.ucsc.bostau3.masked.那BSgenome.Btaurus.UCSC.bosTau4那BSgenome.Btaurus.UCSC.bosTau4.masked那BSgenome.Btaurus.UCSC.bosTau6那BSgenome.Btaurus.UCSC.bosTau6.masked那BSgenome.Btaurus.UCSC.bosTau8那BSgenome.Celegans.UCSC.ce10那BSgenome.Celegans.UCSC.ce11那bsgenome.celegans.ucsc.CE2.那bsgenome.celegans.ucsc.CE6.那BSgenome.Cfamiliaris.UCSC.canFam2那BSgenome.Cfamiliaris.UCSC.canFam2.masked那BSgenome.Cfamiliaris.UCSC.canFam3那BSgenome.Cfamiliaris.UCSC.canFam3.masked那bsgenome.dmelanogaster.ucsc.dm2.那bsgenome.dmelanogaster.ucsc.dm2.masked.那bsgenome.dmelanogaster.ucsc.dm3.那bsgenome.dmelanogaster.ucsc.dm3.masked.那bsgenome.dmelanogaster.ucsc.dm6.那BSgenome.Drerio.UCSC.danRer10那bsgenome.drerio.ucsc.danrer5.那bsgenome.drerio.ucsc.danrer5.masked.那bsgenome.drerio.ucsc.danrer6.那BSgenome.Drerio.UCSC.danRer6.masked那bsgenome.drerio.ucsc.danrer7.那BSgenome.Drerio.UCSC.danRer7.masked那BSgenome.Ecoli.NCBI.20080805那bsgenome.gaculeatus.ucsc.gasacu1.那BSgenome.Gaculeatus.UCSC.gasAcu1.masked那bsgenome.ggallus.ucsc.galgal3.那BSgenome.Ggallus.UCSC.galGal3.masked那bsgenome.ggallus.ucsc.galgal4.那BSgenome.Ggallus.UCSC.galGal4.masked那bsgenome.ggallus.ucsc.galgal5.那BSgenome.Hsapiens.NCBI.GRCh38那bsgenome.hsapiens.ucsc.hg17那bsgenome.hsapiens.ucsc.hg17.masked.那bsgenome.hsapiens.ucsc.hg18那BSgenome.Hsapiens.UCSC.hg18.masked那bsgenome.hsapiens.ucsc.hg19.那bsgenome.hsapiens.ucsc.hg19.masked.那bsgenome.hsapiens.ucsc.hg38那BSgenome.Hsapiens.UCSC.hg38.masked那BSgenome.Mfascicularis.NCBI.5.0那bsgenome.mfuro.ucsc.musfur1.那bsgenome.mmulatta.ucsc.Rhemac2.那BSgenome.Mmulatta.UCSC.rheMac2.masked那bsgenome.mmulatta.ucsc.Rhemac3.那bsgenome.mmulatta.ucsc.Rhemac3.Masked.那bsgenome.mmulatta.ucsc.Rhemac8.那bsgenome.mmusculus.ucsc.mm10那BSgenome.Mmusculus.UCSC.mm10.masked那BSgenome.Mmusculus.UCSC.mm8那bsgenome.mmusculus.ucsc.mm8.masked.那BSgenome.Mmusculus.UCSC.mm9那bsgenome.mmusculus.ucsc.mm9.masked.那bsgenome.osativa.msu.msu7.那BSgenome.Ptroglodytes.UCSC.panTro2那bsgenome.ptroglodytes.ucsc.pantro2.masked.那BSgenome.Ptroglodytes.UCSC.panTro3那bsgenome.ptroglodytes.ucsc.pantro3.masked.那BSgenome.Ptroglodytes.UCSC.panTro5那BSgenome.Ptroglodytes.UCSC.panTro6那bsgenome.rnorvegicus.ucsc.rn4.那bsgenome.rnorvegicus.ucsc.rn4.masked.那bsgenome.rnorvegicus.ucsc.rn5.那bsgenome.rnorvegicus.ucsc.rn5.masked.那bsgenome.rnorvegicus.ucsc.rn6.那bsgenome.scerevisiae.ucsc.saccer1.那bsgenome.scerevisiae.ucsc.saccer2.那bsgenome.scerevisiae.ucsc.saccer3.那bsgenome.sscrofa.ucsc.susscr11.那bsgenome.sscrofa.ucsc.susscr3.那bsgenome.sscrofa.ucsc.susscr3.masked.那bsgenome.tgondii.toxodb.7.0.那bsgenome.tguttata.ucsc.taegut1那bsgenome.tguttata.ucsc.taegut1.masked.那bsgenome.tguttata.ucsc.taegut2.那BSgenome.Vvinifera.URGI.IGGP12Xv0那BSgenome.Vvinifera.URGI.IGGP12Xv2那bsgenome.vvinifera.urgi.iggp8x.那篮球选手那魅力那Chippeakanno.那chromVAR那cobindr.那Crispseek.那crisprseekplus那diffHic那esATAC那fitCons.UCSC.hg19那GCAPC.那基因组那基因组织那GenVisR那ggbio那GMAPR.那GreyListChIP那GUIDESEQ.那GVIZ.那hiAnnotator那inpas.那IsoformSwitchAnalyzeR那Madseq.那mafdb.1kgenomes.phase1.grch38.那mafdb.1kgenomes.phase1.hs37d5.那mafdb.1kgenomes.phase3.grch38.那mafdb.1kgenomes.phase3.hs37d5.那mafdb.esp6500si.v2.ssa137.grch38.那MafDb.ESP6500SI.V2.SSA137.hs37d5那mafdb.exac.r1.0.grch38.那mafdb.exac.r1.0.hs37d5.那MafDb.ExAC.r1.0.nonTCGA.GRCh38那MafDb.ExAC.r1.0.nonTCGA.hs37d5那MafDb.gnomAD.r2.0.1.GRCh38那MafDb.gnomAD.r2.0.1.hs37d5那mafdb.gnomadex.r2.0.1.grch38.那mafdb.gnomadex.r2.0.1.hs37d5.那MafDb.TOPMed.freeze5.hg19那mafdb.topmed.freeze5.hg38.那MethylSeekR那MMDiff2那MotifBreakr.那motifmatchr那msgbsR那Phastcons100way.ucsc.hg19.那phastcons100way.ucsc.hg38那phastCons7way.UCSC.hg38那平那Podkat.那QSEA.那Quasr.那r453plus1toolbox.那Rarevariantvis.那林那重新那Repitools那scmeth那seqplots.那snplocs.hsapiens.dbsnp.20120608那snplocs.hsapiens.dbsnp141.grch38.那snplocs.hsapiens.dbsnp142.grch37.那snplocs.hsapiens.dbsnp144.grch37.那snplocs.hsapiens.dbsnp144.grch38.那snplocs.hsapiens.dbsnp149.grch38.那snplocs.hsapiens.dbsnp150.grch38.那snplocs.hsapiens.dbsnp151.grch38.那Sparsesignatures.那TFBStools.那特纳那VariantAnnotation那变型滤波器那VariantTools那xtrasnplocs.hsapiens.dbsnp141.grch38.那XtraSNPlocs.Hsapiens.dbSNP144.GRCh37那XtraSNPlocs.Hsapiens.dbSNP144.GRCh38
建议我	Biostrings那biovizBase那chipseq.那easyrnaseq.那Generegionscan.那GenomeInfoDb那基因管理那基因组法那Genomicranges.那genoset那metaseqr.那幻影那mutationalpatterns.那ORFik那QDNASEQ.那补偿那rtracklayer那snplocs.hsapiens.dbsnp.20101109那连接工具那挥舞车
我的链接
建立报告

包档案包

跟随bob 体育网址 在r会话中使用此包的说明。

源包	bsgenome_1.48.0.tar.gz.
Windows二进制文件	BSgenome_1.48.0.zip
Mac OS X 10.11 (El Capitan)	bsgenome_1.48.0.tgz.
源存储库	git克隆https://git.bioconductor.org/packages/BSgenome
源存储库（开发人员访问）	git clone git@git.biocondion.org：包/ bsgenome
包短网址	http://biocidodder.org/packages/bsgenome/
包裹下载报告	下载统计信息