# # # R代码源的HowTo装饰图案。Rnw“# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块1号:HowTo。Rnw: 46-49 # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #要求(“CNTools”)的数据(sampleData)头(sampleData) # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块2号:HowTo。Rnw: 65 - 70 # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # cnseg < - cnseg (sampleData [(。元素(sampleData, " ID ",样本(独特(sampleData [" ID "]), 20))))) rdseg < - getRS (cnseg, =“地区”,输入= FALSE, XY = FALSE,什么=“的意思是”)的数据(“geneInfo”) geneInfo < - geneInfo[样本(1:nrow (geneInfo), 2000),] rdByGene <——getRS (cnseg, =“基因”,输入= FALSE, XY = FALSE, geneMap = geneInfo什么=“中值”)# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块3号:HowTo。Rnw: 75 - 76 # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # reducedseg < - rs (rdseg) # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块数量4:HowTo。Rnw: 82 - 85 # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # f1 < - kOverA (5、1) ffun < - filterfun (f1) filteredrs <——genefilter (rdseg ffun) # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块5号:HowTo。Rnw: 90 - 91 # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # filteredrs <——madFilter (rdseg, 0.8) # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块6号:HowTo。Rnw: 96 - 98 # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # hc <——hclust (getDist (filteredrs、方法=“欧式”),方法=“完整”)情节(hc,挂= 1,cex = 0.8,主要= " xlab = " ") # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块7号:HowTo。Rnw: 125 - 126 # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # sessionInfo ()