scone

DOI:10.18129/B9.bioc.scone

Single Cell Overview of Normalized Expression data

Bioconductor version: Release (3.6)

SCONE is an R package for comparing and ranking the performance of different normalization schemes for single-cell RNA-seq and other high-throughput analyses.

Author: Michael Cole [aut, cre, cph], Davide Risso [aut, cph]

Maintainer: Michael Cole

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported source("//www.anjoumacpherson.com/biocLite.R") biocLite("scone")

Documentation

HTML	R Script	scone Vignette
PDF		Reference Manual
Text		NEWS

Details

biocViews	Coverage,GeneExpression,Normalization,Preprocessing,QualityControl,RNASeq,Sequencing,SingleCell,Software,Transcriptomics
Version	1.2.0
In Bioconductor since	BioC 3.5 (R-3.4) (1 year)
License	Artistic-2.0
Depends	R (>= 3.4), methods,SummarizedExperiment
Imports	graphics, stats, utils,aroma.light,BiocParallel,class,集群,compositions,diptest,edgeR,fpc,gplots, grDevices,hexbin,limma,matrixStats,mixtools,RColorBrewer,boot,rhdf5,RUVSeq,rARPACK
LinkingTo
Suggests	BiocStyle,DT,ggplot2,knitr,miniUI,NMF,plotly,reshape2,rmarkdown,scran,scRNAseq,shiny,testthat,visNetwork
SystemRequirements
Enhances
URL
BugReports	https://github.com/YosefLab/scone/issues
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Followbob 体育网址 在你使用这个包R指示session.

Source Package	scone_1.2.0.tar.gz
Windows Binary	scone_1.2.0.zip
Mac OS X 10.11 (El Capitan)	scone_1.2.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/scone
Package Short Url	//www.anjoumacpherson.com/packages/scone/
Package Downloads Report	Download Stats