TFHAZ

DOI:10.18129 / B9.bioc.TFHAZ

转录因子高积累区

Bioconductor版本:版本(3.6)

它发现trascription因子(TF)高积累的DNA区域,即。,regions along the genome where there is a high presence of different transcription factors. Starting from a dataset containing the genomic positions of TF binding regions, for each base of the selected chromosome the accumulation of TFs is computed. Three different types of accumulation (TF, region and base accumulation) are available, together with the possibility of considering, in the single base accumulation computing, the TFs present not only in that single base, but also in its neighborhood, within a window of a given width. Then, high accumulation DNA zones are defined as regions of the genome formed by contiguous bases with accumulation equal or higher than a given threshold. In addition, some functions are provided in order to analyze, visualize and compare results obtained with different input parameters.

作者:Alberto Marchesi马可Masseroli

维护人员:阿尔贝托Marchesi <阿尔贝托。在gmail.com march91 >

安装

安装这个包,开始R和输入:

# #试试http://如果https:// url不支持源(“//www.anjoumacpherson.com/biocLite.R”) biocLite (“TFHAZ”)

文档

HTML	R脚本	TFHAZ
PDF		参考手册

细节

biocViews	BiologicalQuestion,ChIPSeq,报道,软件,转录
版本	1.0.0
许可证	艺术- 2.0
取决于	R (> = 3.4)
进口	GenomicRanges,S4VectorsgrDevices图形,统计,跑龙套,IRanges
链接
建议	BiocStyle,knitr,rmarkdown
SystemRequirements
增强了
URL
取决于我
进口我
建议我
构建报告

包档案

遵循bob 体育网址 指示在R会话中使用这个包。

源包	TFHAZ_1.0.0.tar.gz
Windows二进制	TFHAZ_1.0.0.zip
Mac OS X 10.11(埃尔卡皮坦)	TFHAZ_1.0.0.tgz
源库	git克隆https://git.bioconductor.org/packages/TFHAZ
包短Url	//www.anjoumacpherson.com/packages/TFHAZ/
包下载报告	下载数据